View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18589_low_37 (Length: 275)
Name: NF18589_low_37
Description: NF18589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18589_low_37 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 12843609 - 12843354
Alignment:
| Q |
1 |
ttatgcgtccattgatgcttattgtgcttttagtatcggaattcgcgttcaagcttggaggtaccgttaagattgattttacattgtaaatttcaatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12843609 |
ttatgcgtccattgatgcttattgtgcttttagtatcggaattcgcgttcaagcttggaggtaccgttaagattgattttacattgtaaatttcaatcaa |
12843510 |
T |
|
| Q |
101 |
gattcaagattatagtgttaatgtctactgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgttaatttcacctataga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12843509 |
gattcaagattatagtgttaatgtctactgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgttaatttcacctataga |
12843410 |
T |
|
| Q |
201 |
ggtagaaatagaatcatatagtgtttgatattagtcttgttgagtattgcacttat |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12843409 |
ggtagaaatagaatcatatagtgtttgatattagtcttgttgagtattgcacttat |
12843354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 12861872 - 12862057
Alignment:
| Q |
1 |
ttatgcgtccattgatgcttattgtgcttttagtatcggaattcgcgttcaagcttggaggtaccgttaagattgattttacattgtaaatttcaatcaa |
100 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| |||||||||| | | |||||||||||||||| ||||||| |||||||| || |||||||||||||| |
|
|
| T |
12861872 |
ttatgcgtccattgatgcttattttgcgtttcttatcggaatttgtttccaagcttggaggtacccttaagatcgattttactttctaaatttcaatcaa |
12861971 |
T |
|
| Q |
101 |
gattcaagattatagtgttaatgtctactgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgtta |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12861972 |
gattcaagattatagtgttaatgtctactgttaagatcgattaatcactcttatgttcgtaactcattttagagattatagtgtta |
12862057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 111 - 185
Target Start/End: Complemental strand, 13125837 - 13125763
Alignment:
| Q |
111 |
tatagtgttaatgtctactgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgtt |
185 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13125837 |
tatagtgttaatgtgtactgttaagatcgattaatcactcttatgttcctaactcattttagagattatagtgtt |
13125763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 13125629 - 13125589
Alignment:
| Q |
89 |
aatttcaatcaagattcaagattatagtgttaatgtctact |
129 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
13125629 |
aatttctatcaagattcaagatcatagtgttaatgtctact |
13125589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 256
Target Start/End: Complemental strand, 13125587 - 13125540
Alignment:
| Q |
209 |
tagaatcatatagtgtttgatattagtcttgttgagtattgcacttat |
256 |
Q |
| |
|
|||||| ||| |||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
13125587 |
tagaataatacagtgtttgattttagtgttgttgagtattgcacttat |
13125540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University