View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18589_low_39 (Length: 259)
Name: NF18589_low_39
Description: NF18589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18589_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 243
Target Start/End: Complemental strand, 46628855 - 46628619
Alignment:
| Q |
7 |
tccaagaaaatatcattataattctgcttaaagaacaccatctgccaagaaaaataggaaaacaaaacaacatgagcaattttcagccaagattgcaaaa |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46628855 |
tccatgaaaatatcattataattctgcttaaagaacaccatctgccaagaaaaataggaaaacaaaacaacatgagcaattttcagccaagattgcaaaa |
46628756 |
T |
|
| Q |
107 |
attggcaatacgatctgaaacatcaaaaccctcacttcaacatggttacctaaatcactcacattaaaaactattatttttctttgtcaataaaccaaaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
46628755 |
attggcaatacgatctgaaacatcaaaaccctcacttcaacatggttacctaaatcactcacgttaaaaactattatttttctttgtcaataaaccaaaa |
46628656 |
T |
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| Q |
207 |
attgttaaannnnnnncttaacacaacttcataagtg |
243 |
Q |
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|||||||| ||||||||||||||||||||| |
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| T |
46628655 |
attgttaattttttttcttaacacaacttcataagtg |
46628619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 104 - 211
Target Start/End: Complemental strand, 46616574 - 46616467
Alignment:
| Q |
104 |
aaaattggcaatacgatctgaaacatcaaaaccctcacttcaacatggttacctaaatcactcacattaaaaactattatttttctttgtcaataaacca |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||| |||||||| |
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| T |
46616574 |
aaaattggcaatacgatctgaaacatcaaaaccctcacttcaacacggttacctaaatcactcacattaaaaaatattatttttcattgtaaataaaccg |
46616475 |
T |
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| Q |
204 |
aaaattgt |
211 |
Q |
| |
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|||||||| |
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| T |
46616474 |
aaaattgt |
46616467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 46636176 - 46636114
Alignment:
| Q |
12 |
gaaaatatcattataattctgcttaaagaacaccatctgccaagaaaaataggaaaacaaaac |
74 |
Q |
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||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||| |
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| T |
46636176 |
gaaaatatcattataattctggttaaaggacaccatctgccaagaaatataggaaaacaaaac |
46636114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 183
Target Start/End: Original strand, 46644544 - 46644624
Alignment:
| Q |
102 |
caaaaattggcaatacgatctgaaacatcaaaaccctcacttcaacatggttacctaaatcactcacattaaaaactattat |
183 |
Q |
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||||||||||||||| ||||||||| || |||||||| ||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
46644544 |
caaaaattggcaatatgatctgaaaaatgaaaacccttacttcaacatggttacctaaacaactcaca-taaaaactattat |
46644624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 46644176 - 46644221
Alignment:
| Q |
27 |
attctgcttaaagaacaccatctgccaagaaaaataggaaaacaaa |
72 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
46644176 |
attctgctcaaaggacaccatctgccaagaaaaataggaaaacaaa |
46644221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 46617484 - 46617416
Alignment:
| Q |
6 |
gtccaagaaaatatcattataattctgcttaaagaacaccatctgccaagaaaaataggaaaacaaaac |
74 |
Q |
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||||| ||||||| | ||||||||||| |||||| ||||||||||| |||||| |||| |||||||||| |
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| T |
46617484 |
gtccatgaaaataacgttataattctggttaaaggacaccatctgcaaagaaatatagtaaaacaaaac |
46617416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 46617100 - 46617051
Alignment:
| Q |
158 |
aaatcactcacattaaaaactattatttttctttgtcaataaaccaaaaa |
207 |
Q |
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||||||||||||| |||| |||| ||||| | |||||||||||||||||| |
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| T |
46617100 |
aaatcactcacataaaaagctataattttcccttgtcaataaaccaaaaa |
46617051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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