View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18589_low_4 (Length: 702)
Name: NF18589_low_4
Description: NF18589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18589_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 159; Significance: 3e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 7 - 311
Target Start/End: Complemental strand, 39386392 - 39386100
Alignment:
| Q |
7 |
atgtccaagaatattaagttaaatgaattaacttttgagaatacataccttctcattcatgcttctttttcaaatgacatcctcaatcttcttaagaatg |
106 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||| |
|
|
| T |
39386392 |
atgtccaacaatattaagttaaatgaattaacttttgagaatacataccttct-------------ttttcaaataacatcatcaatcttcttaagaatg |
39386306 |
T |
|
| Q |
107 |
atatgaccaatccnnnnnnnn-aagagagtatattttgtttcggttattgtttgattgtcctcgtaacaannnnnnnnngtatatttaaacacaagagag |
205 |
Q |
| |
|
||| |||||| | ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
39386305 |
atacgaccaaccatttttttttaagagagtatattttatttcggttattgtttgattgtcctcgtaacaatttttttttgtatatttaaacacaagagag |
39386206 |
T |
|
| Q |
206 |
aactagaatgtaatatacgagacatttactagcattattatattattaaatctgtactttgtgttaaatatttgaatctgctaaaacttatgcatttaaa |
305 |
Q |
| |
|
||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39386205 |
aactagaatgtaatatatgagagatttactatcattattatattattaaatctgtactttgtgttaaatatttaaatctgctaaaacttatgcatttaaa |
39386106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 547 - 658
Target Start/End: Complemental strand, 39386092 - 39385981
Alignment:
| Q |
547 |
tctcacccctaatgatgcgtcaaaatatgtgttttaagtcgaacatttggtaggtgatgagaggtttgtttccatacgctagtggagaattacgaattgt |
646 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39386092 |
tctcacccctaatgatacgtcaaaatatgtgttttaagtcgaacatttggtaggtgatgagaggtttgtttccatacgctagtggagaattacgaattgt |
39385993 |
T |
|
| Q |
647 |
aacagaatatga |
658 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39385992 |
aacagaatatga |
39385981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University