View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18589_low_40 (Length: 254)
Name: NF18589_low_40
Description: NF18589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18589_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 35449569 - 35449810
Alignment:
| Q |
1 |
tcatgtctctagaatattgagtatgtattttaaattttcagaatgatagaaattaaaacaaatacaagaagaaaaaagtcatcatatctcttttatggta |
100 |
Q |
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| T |
35449569 |
tcatgtctatagaatattgagtatgtattttaaattttcagaatgatagaaattaaaacgaatacaagcagaaaaaagtcatcata-ctcttttatggta |
35449667 |
T |
|
| Q |
101 |
ggcgcaccgtggcacataagaaacaaagataaataaagagaattttaatgaaattcagttcagaaattattatacttgtg-nnnnnnnnnggacttgata |
199 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35449668 |
ggcgcaccgtggcacataagaaccagagataaataaagagaattttaatgaaattcagttcagaaattattatacttgtgaaaaaaaaaaggacttgata |
35449767 |
T |
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| Q |
200 |
ccgatgaaaaacacaatctagtgaaaacggtgaaaacaatatt |
242 |
Q |
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| T |
35449768 |
ccgatgaaaaacacaatctagtgaaaacggtgaaaacaatatt |
35449810 |
T |
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