View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18589_low_42 (Length: 247)
Name: NF18589_low_42
Description: NF18589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18589_low_42 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 7589307 - 7589541
Alignment:
| Q |
13 |
ataaaatctaaaattgaactattcaccatccaccaacatcgttccacataatcaaccctaattatggaaccattcatttctatatccaatatcctccaca |
112 |
Q |
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| T |
7589307 |
ataaaatctaaaattgaactattcaccatccaccaacatcgttccacataatcaaccctaattatggaaccattcatttctagatccaatatcctcctca |
7589406 |
T |
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| Q |
113 |
ccttctcctaaattatctcacatacttctcattataaataatcttcctattacaattcattattcattcttacaataagtgcagttattctccaatagag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7589407 |
ccttctcctaaattatctcacatacttctcattataaataatcttcctattacaattcattattcattcttacaataactgcagttattctccaatagag |
7589506 |
T |
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| Q |
213 |
aacaactgcaattactttaagaatcataaaaattt |
247 |
Q |
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|||||||||||||||||||||||||| |||||||| |
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| T |
7589507 |
aacaactgcaattactttaagaatcacaaaaattt |
7589541 |
T |
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