View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18589_low_6 (Length: 603)
Name: NF18589_low_6
Description: NF18589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18589_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 478; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 90 - 587
Target Start/End: Complemental strand, 43102469 - 43101972
Alignment:
| Q |
90 |
atcctcaatttctttcttctttcacttcttttaatttaaattcctaaattcaaaagtgttaaaattagagtacctaatttttaacaacaatgtcaccgtt |
189 |
Q |
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| T |
43102469 |
atcctcaatttctttcttctttcacttcttttaatttaaattcctaaattcaaaagtgttaaaattagagtacctaatttttaacaacaatgtcaccgtt |
43102370 |
T |
|
| Q |
190 |
taagaacaatatagtttgaatttacgaacaaaaaataatgagtcattcatatccaatgtaacgtgttatgaatgaacacacgtgattgttgttcattttt |
289 |
Q |
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| T |
43102369 |
taagagcaatatagtttgaatttacgaacaaaaaataatgagtcattcatgtccaatgtaacgcgttatgaatgaacacacgtgattgttgttcattttt |
43102270 |
T |
|
| Q |
290 |
agttgtggttcacagtcacaaaacataacataaatgataacaatacaatataaacgtaacttaaaaacaaactgtaaggattttggtctccaactccaaa |
389 |
Q |
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| T |
43102269 |
agttgcggttcacggtcacaaaacataacataaatgataacaatacaatataaacgtaacttaaaaacaaactgtaaggattttggtctccaactccaaa |
43102170 |
T |
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| Q |
390 |
catcgatgaacttggacaaaactcaaatattagcaaacatacttttggggatgatcacgatgttggtcaatgtttaactaaaaaacacattcaattattt |
489 |
Q |
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| T |
43102169 |
catcgatgaacttggacaaaactcaaatattagcaaacatacttttggggatgatcacgatgttggtcaatgtttaactaaaaaacacattcaattattt |
43102070 |
T |
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| Q |
490 |
cacttttccctcatcatgccccgtccattatatttaatttgtcatcttctatgctttcacggaaaaaatattgaatttgattgagttggtttgaaaaa |
587 |
Q |
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| T |
43102069 |
cacttttccctcatcatgccccgtccattatatttaatttgtcatcttctatgctttcacggaaaaaatattgaatttgattgagttggtttgaaaaa |
43101972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 43102513 - 43102477
Alignment:
| Q |
12 |
atcatcattaaaataaacacacataacattaatctta |
48 |
Q |
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| T |
43102513 |
atcatcattaaaataaacacacataacattaatctta |
43102477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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