View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18589_low_7 (Length: 602)
Name: NF18589_low_7
Description: NF18589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18589_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 10 - 351
Target Start/End: Complemental strand, 340895 - 340547
Alignment:
| Q |
10 |
catcatcagagtttttgagaaccaaatcaacgaaagctctactgttgctatttgttggaaagggaggaggattaggatctaaggtccacaacttgttcct |
109 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
340895 |
catcttcagagtttttgagaaccaaatcaacgaaagctctactgttgctatttgttggaaagggaggaggattaggatctaagatccacaacttgttcct |
340796 |
T |
|
| Q |
110 |
tgcaaatccatgatgttcaagagtaccaaaatttgagaactgcatatggat-aatataaagtacttaaagaaaaaacaataaaccaaaacatacaagctt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
340795 |
tgcaaatccatgatgttcaagagtaccaaaatttgagaactgcatatggatggatataaagtacttaaagaaaaaacaataaacaaaaacatacaagctc |
340696 |
T |
|
| Q |
209 |
tataa---gatacacgtacttgaggaaaacatattggaatgcctccgcgtaaagatcttggaggagtaaaattagcctgcatttattattattcatgtca |
305 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
340695 |
tataagatgatacacgtacttgaggaaaacatattggaatgcctccgcgtaaagatcttggaggagtaaaattagcctgcatttattattattcatgtca |
340596 |
T |
|
| Q |
306 |
aaacaattatattcatttg---ttttaacttccttttcaggcatgagta |
351 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
340595 |
aaacaattatattgatttgtttttttaacttccttttcaggcatgagta |
340547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 438 - 558
Target Start/End: Complemental strand, 340540 - 340420
Alignment:
| Q |
438 |
tgtagcttgttaccttactactaacaaataacaattcttctccacgttcgttcttccaagatgtaacttgtcccccgtatagatacacctgaaaatgaaa |
537 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
340540 |
tgtagctggttaccttactactaacaaataacaattcttctccacgttcgttcttccaagatgtaacttgtcccccgtatagatacacctgaaaatgaaa |
340441 |
T |
|
| Q |
538 |
ccattcttatatactattaag |
558 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
340440 |
ccattcttatatacaattaag |
340420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University