View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18589_low_9 (Length: 523)
Name: NF18589_low_9
Description: NF18589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18589_low_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 10 - 523
Target Start/End: Original strand, 8428446 - 8428959
Alignment:
| Q |
10 |
aatatcaggacgatgatttatttatctatagatgtgattaactctaacctccaaaactattcaaaataactctaatctctaagtccacatgaagcttgac |
109 |
Q |
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| T |
8428446 |
aatatgaggacgacgatttatttatctatagatgtgattaactctaacctccaaaactattcaaaataactctaatctctaagtccacatgaagcttgac |
8428545 |
T |
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| Q |
110 |
agaacctaaagcccttccctcaaccaaaagcaataacatatgcacttcctaacaaaggacaggaaatgaaatcaaactgataaatcttaagatgaaataa |
209 |
Q |
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| T |
8428546 |
agaacctaaagcccttccctcaaccaaaagcaataacatatgcacttcctaacaaaggacaggaaatgaaatcaaactgataaatcttaagatgaaataa |
8428645 |
T |
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| Q |
210 |
tagnnnnnnnccagcgatacaccaaataacaagtaacaagatcaaatcattctgttatagttttggaatggggattttatcgttttaatacatagcgata |
309 |
Q |
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| T |
8428646 |
tggaaaaaaaccagcgatacaccaaataacaagtaacaagatcaaatcattctgttatagttttggaatggggattttatcgttttaatacatagcgata |
8428745 |
T |
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| Q |
310 |
cacattgattgagtcaggtcagtgaccttgcatatcaagcatttcatcgagtcgtttcaatttttccaagccttcactgatcaagaaacggatcctttgt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8428746 |
cacattgattgagtcaggtcagtgaccttgcatatcaagcatttcatcgagtcgtttcaatttttccaagccttcactgatcaagaaacggatcctttgt |
8428845 |
T |
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| Q |
410 |
ttgtcattgcagtttcgattaatttcaatctcttgtctaatagtttgtctcagttcacctgcacatctcaagcattgtcatgtcatgaatcatcatcatg |
509 |
Q |
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| T |
8428846 |
ttgtcattgcagtttcgattaatttcaatctcttgtctaatagtttgtctcagttcacctgcacatctcaagcattgtcatgtcatgaatcatcatcatg |
8428945 |
T |
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| Q |
510 |
attgggattacact |
523 |
Q |
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| T |
8428946 |
attgggattacact |
8428959 |
T |
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