View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_high_13 (Length: 427)
Name: NF1858_high_13
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 54 - 417
Target Start/End: Original strand, 27773126 - 27773489
Alignment:
| Q |
54 |
ctgaataatatgctctgacaaatggaggagaatttaatggtaacgtataaaaatatcataaaacattaatggtaagttgaattcctactggttgaggtta |
153 |
Q |
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| T |
27773126 |
ctgaataatatgctctgacaaatggaggagaatttaatgataacgtataaaaatatcataaaacattaatgataagttgaattcctactggttgaggtta |
27773225 |
T |
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| Q |
154 |
ggaagtcacggtgttactgttagctatagctccgatggttcagcttttggtgtttgagtagttggaacttagaaaatacttatcatagaagtaatgagta |
253 |
Q |
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| T |
27773226 |
ggaagtcacggtgttactgttagctatagctccgttggttcagcttttggtgtttgagtagttggaacttagaaaatacttatcatagaagtaatgagta |
27773325 |
T |
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| Q |
254 |
gttgagctaataatctgtgccagttaaattttgagcctttccatgtgctgacttctgaatcactacactagtagtgtgtagaagctcatgttcatccatc |
353 |
Q |
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| T |
27773326 |
gttgagctaataatctgtgccagttaaattttgagcctttccatgtgctgacttctgaatcactacactagtagtgtgtagaagctcatgttcatccatc |
27773425 |
T |
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| Q |
354 |
aatatcaactggtttatgatttatcaattggattctgcatggttttctgtctccctttgcttct |
417 |
Q |
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| T |
27773426 |
aatatcaactggtttatgatttatcaattggattctgcatggttttctgtctccctttgtttct |
27773489 |
T |
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