View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1858_high_16 (Length: 401)

Name: NF1858_high_16
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1858_high_16
NF1858_high_16
[»] chr1 (5 HSPs)
chr1 (158-273)||(6493886-6494001)
chr1 (276-385)||(6493329-6493438)
chr1 (25-102)||(6494000-6494077)
chr1 (125-174)||(28061825-28061874)
chr1 (137-174)||(7953497-7953534)
[»] chr2 (3 HSPs)
chr2 (43-190)||(44691581-44691728)
chr2 (117-258)||(44514964-44515105)
chr2 (124-252)||(40919603-40919730)
[»] chr5 (3 HSPs)
chr5 (56-273)||(29300151-29300368)
chr5 (209-267)||(18305824-18305882)
chr5 (118-174)||(10428993-10429049)
[»] chr8 (5 HSPs)
chr8 (124-174)||(27179872-27179922)
chr8 (129-266)||(13310267-13310404)
chr8 (206-258)||(31400794-31400846)
chr8 (148-259)||(29576479-29576589)
chr8 (231-267)||(44682821-44682857)
[»] chr4 (1 HSPs)
chr4 (205-266)||(47550150-47550211)
[»] chr3 (2 HSPs)
chr3 (209-274)||(49455196-49455261)
chr3 (26-174)||(9367507-9367655)
[»] chr6 (2 HSPs)
chr6 (276-381)||(11335783-11335888)
chr6 (43-95)||(14431795-14431847)


Alignment Details
Target: chr1 (Bit Score: 108; Significance: 4e-54; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 158 - 273
Target Start/End: Complemental strand, 6494001 - 6493886
Alignment:
Q  158 gcatattgaagatgagacaaaaccattccttccccattgaagcgcacaccttcaaacaaattaagcctcaccacattcctcatcaagccactaaaacctt 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6494001 gcatattgaagatgagacaaaaccattccttccccattgaagcgcacaccttcaaacaaattaagcctcaccacattcctcatcaagccactaaaacctt 6493902  T
Q  258 ccaccaccaactaaaa 273  Q
    || |||||||| ||||    
T  6493901 ccgccaccaacaaaaa 6493886  T

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Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 276 - 385
Target Start/End: Complemental strand, 6493438 - 6493329
Alignment:
Q  276 ttaaagccacgaaataagacaataatcctttaggcatcacctcgtttgcatgaaattgatagaataaaatatgcacctcatccttcattaaatgccaaaa 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  6493438 ttaaagccacgaaataagacaataatcctttaggcatcacctcgtttgcatgaaattgatcgaataaaatatggacctcatccttcattaaatgccaaaa 6493339  T
Q  376 ctccttgaag 385  Q
    ||||||||||    
T  6493338 ctccttgaag 6493329  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 6494077 - 6494000
Alignment:
Q  25 tacattgattccgataagacaactcttaaagaaattaactttaagcccggatgccatctcaaaaccccttaaaagagc 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6494077 tacattgattccgataagacaactcttaaagaaattaactttaagcctggatgccatctcaaaaccccttaaaagagc 6494000  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 28061825 - 28061874
Alignment:
Q  125 accgtcgccttccctatacaaatagtatcatccgcatattgaagatgaga 174  Q
    ||||||| | |||||||||||| ||||||||| |||||||||||||||||    
T  28061825 accgtcggcatccctatacaaagagtatcatcggcatattgaagatgaga 28061874  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 7953534 - 7953497
Alignment:
Q  137 cctatacaaatagtatcatccgcatattgaagatgaga 174  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  7953534 cctatacaaagagtatcatctgcatattgaagatgaga 7953497  T

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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 43 - 190
Target Start/End: Complemental strand, 44691728 - 44691581
Alignment:
Q  43 acaactcttaaagaaattaactttaagcccggatgccatctcaaaaccccttaaaagagccatgagcacccattaattgttcaccgtcgccttccctata 142  Q
    |||||| ||||||||||||||| | |  |||||  ||||||||||||||||||| |||||  | | ||||||| |||| | |||||| || ||||| |||    
T  44691728 acaacttttaaagaaattaactcttaaaccggacaccatctcaaaaccccttaagagagctttcaacacccataaattttccaccgtagctttccccata 44691629  T
Q  143 caaatagtatcatccgcatattgaagatgagacaaaaccattccttcc 190  Q
    ||||| |||||||||||||||||||| ||||||||  |||||||||||    
T  44691628 caaatcgtatcatccgcatattgaaggtgagacaattccattccttcc 44691581  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 117 - 258
Target Start/End: Original strand, 44514964 - 44515105
Alignment:
Q  117 aattgttcaccgtcgccttccctatacaaatagtatcatccgcatattgaagatgagacaaaaccattccttccccattgaagcgcacaccttcaaacaa 216  Q
    |||| ||||||||||||||||||| |||||||||||||||||||  |||||| ||||||||   || ||| |||  ||  || || | ||||||||| ||    
T  44514964 aattattcaccgtcgccttccctagacaaatagtatcatccgcaagttgaaggtgagacaaggacaatccatccgtatgaaaccgaaaaccttcaaataa 44515063  T
Q  217 attaagcctcaccacattcctcatcaagccactaaaaccttc 258  Q
    ||| |||||| ||||||||||||| || ||||| ||||||||    
T  44515064 attgagcctcgccacattcctcattaacccactcaaaccttc 44515105  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 124 - 252
Target Start/End: Complemental strand, 40919730 - 40919603
Alignment:
Q  124 caccgtcgccttccctatacaaatagtatcatccgcatattgaagatgagacaaaaccattccttccccattgaagcgcacaccttcaaacaaattaagc 223  Q
    |||||| |||||||||||||||| |||||| || |||||||||||||| || |  ||| | |||||||  |||||||  | ||||||||||||||||  |    
T  40919730 caccgttgccttccctatacaaagagtatc-tcggcatattgaagatgcgaaatgaccgtcccttccctcttgaagccaaaaccttcaaacaaattacac 40919632  T
Q  224 ctcaccacattcctcatcaagccactaaa 252  Q
    ||| |  ||||||||||||| ||||||||    
T  40919631 ctctctgcattcctcatcaacccactaaa 40919603  T

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Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 56 - 273
Target Start/End: Complemental strand, 29300368 - 29300151
Alignment:
Q  56 aaattaactttaagcccggatgccatctcaaaaccccttaaaagagccatgagcacccattaattgttcaccgtcgccttccctatacaaatagtatcat 155  Q
    ||||| || ||||||||||| ||||||||||| ||||| || || ||| | |  |||||  |||| | |||||| ||||| || ||||||||||||||||    
T  29300368 aaattcaccttaagcccggaagccatctcaaaccccctcaagagcgcctttaatacccacaaattttccaccgtagcctttcccatacaaatagtatcat 29300269  T
Q  156 ccgcatattgaagatgagacaaaaccattccttccccattgaagcgcacaccttcaaacaaattaagcctcaccacattcctcatcaagccactaaaacc 255  Q
    ||||||||||||| || || ||||||| ||| ||| |||  || || | |||||| |||| ||||   || |||||||||||||| |  |||||||||||    
T  29300268 ccgcatattgaaggtgcgataaaaccaatccctcctcatgaaatcgaagaccttcgaacatattatttctaaccacattcctcataagcccactaaaacc 29300169  T
Q  256 ttccaccaccaactaaaa 273  Q
    |||  |||||||| ||||    
T  29300168 ttcggccaccaacaaaaa 29300151  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 18305824 - 18305882
Alignment:
Q  209 tcaaacaaattaagcctcaccacattcctcatcaagccactaaaaccttccaccaccaa 267  Q
    |||||||| || | || |||||||||||||||||| ||||||||||||||| |||||||    
T  18305824 tcaaacaagtttaaccgcaccacattcctcatcaacccactaaaaccttccgccaccaa 18305882  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 10429049 - 10428993
Alignment:
Q  118 attgttcaccgtcgccttccctatacaaatagtatcatccgcatattgaagatgaga 174  Q
    |||||||||||| || ||||| ||||||||||||||||| |||||||| || |||||    
T  10429049 attgttcaccgttgctttccccatacaaatagtatcatcggcatattggaggtgaga 10428993  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 27179922 - 27179872
Alignment:
Q  124 caccgtcgccttccctatacaaatagtatcatccgcatattgaagatgaga 174  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  27179922 caccgtcgcctcccctagacaaatagtatcatccgcatattgaagatgaga 27179872  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 266
Target Start/End: Complemental strand, 13310404 - 13310267
Alignment:
Q  129 tcgccttccctatacaaatagtatcatccgcatattgaagatgagacaaaaccattccttccccattgaagcgcacaccttcaaacaaattaagcctcac 228  Q
    ||||||||||||| ||||||||||||||| ||||||| | ||| || | ||||| |||  || | || || || | ||| |||||||||||  |||| ||    
T  13310404 tcgccttccctatgcaaatagtatcatccacatattgtaaatgtgatataaccaatccaacctccttaaaccggaaaccctcaaacaaattccgcctaac 13310305  T
Q  229 cacattcctcatcaagccactaaaaccttccaccacca 266  Q
    | ||||||||||||| | |||||| |||||| ||||||    
T  13310304 cgcattcctcatcaacctactaaacccttccgccacca 13310267  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 31400846 - 31400794
Alignment:
Q  206 ccttcaaacaaattaagcctcaccacattcctcatcaagccactaaaaccttc 258  Q
    |||||||| |||||||| | ||| |||||||||||||| ||||||||||||||    
T  31400846 ccttcaaataaattaaggcgcactacattcctcatcaacccactaaaaccttc 31400794  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 148 - 259
Target Start/End: Original strand, 29576479 - 29576589
Alignment:
Q  148 agtatcatccgcatattgaagatgagacaaaaccattccttccccattgaagcgcacaccttcaaacaaattaagcctcaccacattcctcatcaagcca 247  Q
    ||||||||| ||||||||||||||||| |  ||||| |||||||   | ||  | | ||||||||| ||||| |||| ||| ||||| |||||||| |||    
T  29576479 agtatcatcagcatattgaagatgagatatcaccatcccttccctcctaaaatgga-accttcaaataaatttagccgcacaacatttctcatcaaccca 29576577  T
Q  248 ctaaaaccttcc 259  Q
    ||||||||||||    
T  29576578 ctaaaaccttcc 29576589  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 44682857 - 44682821
Alignment:
Q  231 cattcctcatcaagccactaaaaccttccaccaccaa 267  Q
    |||||||||| |||||||||||||||||| |||||||    
T  44682857 cattcctcattaagccactaaaaccttccgccaccaa 44682821  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 266
Target Start/End: Original strand, 47550150 - 47550211
Alignment:
Q  205 accttcaaacaaattaagcctcaccacattcctcatcaagccactaaaaccttccaccacca 266  Q
    ||||||||||||||| || |||||| ||||||||||||| |||| ||| |||||| ||||||    
T  47550150 accttcaaacaaattgagtctcaccgcattcctcatcaaaccaccaaagccttccgccacca 47550211  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 274
Target Start/End: Complemental strand, 49455261 - 49455196
Alignment:
Q  209 tcaaacaaattaagcctcaccacattcctcatcaagccactaaaaccttccaccaccaactaaaac 274  Q
    |||||||||||| ||  |||| |||| |||||||| ||||||||||||||| |||||||| |||||    
T  49455261 tcaaacaaattacgctccaccgcatttctcatcaacccactaaaaccttccgccaccaacaaaaac 49455196  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 9367507 - 9367655
Alignment:
Q  26 acattgattccgataagacaactcttaaagaaattaactttaagcccggatgccatctcaaaaccccttaaaagagccatgagcacccattaattgttca 125  Q
    ||||| ||||| || | |||||||||| | |||||||||||||| || || ||||||||||||||||| || |  ||| | |||  |||   ||| | ||    
T  9367507 acattaattcccatcaaacaactcttataaaaattaactttaagacccgaagccatctcaaaacccctcaacaacgccttaagcgtccaaagattatcca 9367606  T
Q  126 ccgtcgccttccctatacaaatagtatcatccgcatattgaagatgaga 174  Q
    |||  || | |||||| || | |||||||||||||||||||||||||||    
T  9367607 ccgaagcttcccctatgcataaagtatcatccgcatattgaagatgaga 9367655  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 381
Target Start/End: Original strand, 11335783 - 11335888
Alignment:
Q  276 ttaaagccacgaaataagacaataatcctttaggcatcacctcgtttgcatgaaattgatagaataaaatatgcacctcatccttcattaaatgccaaaa 375  Q
    |||||| ||| || |||| |||||| | ||| |||| |||||||||||||||||||||||  || |||||  ||| ||| | |||||  |||| ||||||    
T  11335783 ttaaagtcacaaagtaagccaataaactttttggcaccacctcgtttgcatgaaattgatcaaacaaaatccgcatctcgttcttcaacaaataccaaaa 11335882  T
Q  376 ctcctt 381  Q
    ||||||    
T  11335883 ctcctt 11335888  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 14431847 - 14431795
Alignment:
Q  43 acaactcttaaagaaattaactttaagcccggatgccatctcaaaacccctta 95  Q
    |||||||||| | || |||||||| |||||||| |||||||||||||| ||||    
T  14431847 acaactcttataaaagttaacttttagcccggaagccatctcaaaacctctta 14431795  T

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