View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_high_19 (Length: 393)
Name: NF1858_high_19
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 11 - 378
Target Start/End: Complemental strand, 49634087 - 49633729
Alignment:
| Q |
11 |
cacagattaaagacacaaaatcctcaccaaccacaccaatcaaaccctatcttattattactattattacctatacatatatcacaccaaaatctacgac |
110 |
Q |
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| T |
49634087 |
cacagattaaagacacaaaatcctcaccaa---------tcaaaccctatcttattattactattattacctatacatatatcacaccaaaatctacgac |
49633997 |
T |
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| Q |
111 |
gtgtccctaacatggaaatagttcttgttcttgacgacaatgtcatacatgtgcatgggcttgagcttgttgaagtcctttggaagagaaatgaggtaca |
210 |
Q |
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| T |
49633996 |
gtgtccctaacatggaaatagttcttgttcttgacgacaatgtcatacatgtgcatgggcttgagcttgttgaagtcctttggaagagaaatgaggtaca |
49633897 |
T |
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| Q |
211 |
cggtggaacgtttatggaactgaagcagatgatcagggtcatcgtaatagcgttcccaaccaagtgattgtagcttgcgttctagcaaagaataggaagt |
310 |
Q |
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| T |
49633896 |
cggtggaacgtttatggaactgaagcagatgatcagggtcatcgtaataacgttcccaaccaagtgattgtagcttgcgttctagcaaagaataggaagt |
49633797 |
T |
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| Q |
311 |
gataacttcatttgttggagtgtaaacaagcacctttctactccttccactactactctcacctccct |
378 |
Q |
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| T |
49633796 |
gataacttcatttgttggagtgtaaacaagcacctttctactccttccactactactctcacctccct |
49633729 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 14418665 - 14418719
Alignment:
| Q |
130 |
agttcttgttcttgacgacaatgtcatacatgtgcatgggcttgagcttgttgaa |
184 |
Q |
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| T |
14418665 |
agttcttgttcttgacaacgatgtcatacatgtgcatggacttgaacctgttgaa |
14418719 |
T |
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