View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_high_22 (Length: 362)
Name: NF1858_high_22
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 12 - 348
Target Start/End: Complemental strand, 34992932 - 34992596
Alignment:
| Q |
12 |
atgaaaagggagaagcgtacgtgttccatcaacgataaaaaattaggtgaataattgtcatgttattttaatannnnnnna-aattttagatcacaacca |
110 |
Q |
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| T |
34992932 |
atgaaaagggagaagcgtacgtgttccatcaacgataaaaaattaggtgaataattgtcatgttatttcaatatttttttttaattttagatcacaacca |
34992833 |
T |
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| Q |
111 |
aactataatgcacccaaattttctcgtaaatattaatttatatttacatataatttttgtcatactaaaatgaaaactttaaaaatgatagttaaccctt |
210 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34992832 |
aactctaatgcaccaaaattttctcgtaaatattaatttatatttacgtataatttttgtcatactgaaatgaaaactttaaaaatgatagttaaccctt |
34992733 |
T |
|
| Q |
211 |
ctaccatctcattaattttattgcgatgtttgaagtaagaatcctagtttagagattcaagcttttgaactattctacctttgtatgctactttacaatt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||| |
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| T |
34992732 |
ctaccatctcattaattttattgcgatgtttgaagtaagaatcctagtttagagattcaagcttttgaattattctacc-ttatatgctactttacaatt |
34992634 |
T |
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| Q |
311 |
ttattttagagagtcgaaaatgtaaaatatataaaagt |
348 |
Q |
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||||||||||||||||||||| |||||||||||||||| |
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| T |
34992633 |
ttattttagagagtcgaaaatataaaatatataaaagt |
34992596 |
T |
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