View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_high_23 (Length: 358)
Name: NF1858_high_23
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_high_23 |
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| [»] chr2 (2 HSPs) |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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| [»] scaffold0077 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 129 - 358
Target Start/End: Complemental strand, 2706080 - 2705843
Alignment:
| Q |
129 |
taaatttaacaaattaatatgttagaaattacttgtataccacacttgtagtgtcatcaatatttcttctacttgaccccgctctattgttatgagttcc |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2706080 |
taaatttaacaaattaatatgttagaaattacttgtataccacacttgtagtgttatcaatatttcttctacttggccccgctctattgttatgagttcc |
2705981 |
T |
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| Q |
229 |
gtgagaatatgctcgcttcatatgagttcctagagaatatgatgagtcaaaatgtggctctgtaagttcttatatagacag--------ttaattgatta |
320 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| ||||||||| |||||||||| |||||| |||| |
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| T |
2705980 |
ttgagaatatggccgcttcatatgagttcctagagaatatgatgaatcaaaatgctgctcagtaagttctaatatagacagtaaagtgattaatttatta |
2705881 |
T |
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| Q |
321 |
aaaattgttaatatattgtaaattcatataagtaaatg |
358 |
Q |
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| T |
2705880 |
aaaatagttaatatattgtaaattcatataagtaaatg |
2705843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 2706415 - 2706363
Alignment:
| Q |
10 |
ccccctcttcttctcccagacttgtttcacaataagggtaataatcaatgagt |
62 |
Q |
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| T |
2706415 |
ccccctcttcttcccccagacttgtttcacaataagggtaataatcaatgagt |
2706363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 129 - 358
Target Start/End: Original strand, 14789008 - 14789240
Alignment:
| Q |
129 |
taaatttaacaaattaatatgttagaaattacttgtataccacacttgtagtgtcatcaatatttcttctacttgaccccgctctattgttatgagttcc |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
14789008 |
taaatttaacaaattaatatgttagaaattacttgtataccacacttgtagtgtcatcaatatttcttctacttggccctgctctattgttatgagttcc |
14789107 |
T |
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| Q |
229 |
gtgagaatatgctcgcttcatatgagttcctagagaatatgatgagtcaaaatgtggctctgtaagttcttatatagaca--------gttaattgatta |
320 |
Q |
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| T |
14789108 |
ttgagaatatgctcgcttcatatgagttcctagagaat---atgaatcaaaatgctgctctgtaagttctaatatagacagtaaagtggttaattgatta |
14789204 |
T |
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| Q |
321 |
aaaattgttaatatattgtaaattcatataagtaaatg |
358 |
Q |
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||||| |||| |||||||||||||||||||||||||| |
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| T |
14789205 |
aaaatagtta--atattgtaaattcatataagtaaatg |
14789240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 14764322 - 14764362
Alignment:
| Q |
1 |
ttttccctcccccctcttcttctcccagacttgtttcacaa |
41 |
Q |
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| T |
14764322 |
ttttccctcccccctcttcttcccccagacttgtttcacaa |
14764362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 29640105 - 29640157
Alignment:
| Q |
174 |
ttgtagtgtcatcaatatttcttctacttgaccccgctctattgttatgagtt |
226 |
Q |
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|||||||||||||| |||||||||||||| | |||||| ||||| ||||||| |
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| T |
29640105 |
ttgtagtgtcatcactatttcttctacttaatcccgcttcattgtcatgagtt |
29640157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 207621 - 207688
Alignment:
| Q |
171 |
cacttgtagtgtcatcaatatttcttctacttgaccccgctctattgttatgagttccgtgagaatat |
238 |
Q |
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| T |
207621 |
cacttgtagtgtcatcattatttcttctacttggtcccgcttcattgtcatgagttccttgaaaatat |
207688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0077
Description:
Target: scaffold0077; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 47661 - 47728
Alignment:
| Q |
171 |
cacttgtagtgtcatcaatatttcttctacttgaccccgctctattgttatgagttccgtgagaatat |
238 |
Q |
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| T |
47661 |
cacttgtagtgtcatcactatttcttctacttggttccgcttcattgtcatgagttccttgaaaatat |
47728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 39830 - 39862
Alignment:
| Q |
171 |
cacttgtagtgtcatcaatatttcttctacttg |
203 |
Q |
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| T |
39830 |
cacttgtagtgtcatcattatttcttctacttg |
39862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 22311026 - 22311089
Alignment:
| Q |
175 |
tgtagtgtcatcaatatttcttctacttgaccccgctctattgttatgagttccgtgagaatat |
238 |
Q |
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| T |
22311026 |
tgtagtgtcatcactatttcttctacttggtcccgcttcattgtcatgagttccttgaaaatat |
22311089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 36098081 - 36098148
Alignment:
| Q |
171 |
cacttgtagtgtcatcaatatttcttctacttgaccccgctctattgttatgagttccgtgagaatat |
238 |
Q |
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||||||||||||||||| ||||||||||||||| |||||| ||||| || |||||| ||| ||||| |
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| T |
36098081 |
cacttgtagtgtcatcactatttcttctacttggtcccgcttcattgtcattagttccttgaaaatat |
36098148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 350
Target Start/End: Original strand, 24275804 - 24275845
Alignment:
| Q |
309 |
gttaattgattaaaaattgttaatatattgtaaattcatata |
350 |
Q |
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| T |
24275804 |
gttaattgattcaaaataattaatatattgtaaattcatata |
24275845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 350
Target Start/End: Complemental strand, 24386409 - 24386368
Alignment:
| Q |
309 |
gttaattgattaaaaattgttaatatattgtaaattcatata |
350 |
Q |
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||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
24386409 |
gttaattgattcaaaataattaatatattgtaaattcatata |
24386368 |
T |
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