View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1858_high_24 (Length: 355)
Name: NF1858_high_24
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_high_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 346
Target Start/End: Original strand, 42224361 - 42224690
Alignment:
| Q |
17 |
agtgtccataccatgcagttaacaagtgttgctaggtatggtgctggtgagaattgctccacagatcctttcttccatatcgcaataaaagttggcctgg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42224361 |
agtgtccataccatgcagttaacaagtgttgctaggtatggtgctggtgagaattgctccacagatcctttcttccatatcgcaataaaagttggcctgg |
42224460 |
T |
|
| Q |
117 |
annnnnnnnnnnnnnnncaatacaattattcaattaaacaagggaaatgtacacaaagcatacaagagccatattcttctttaacctagnnnnnnnngag |
216 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
42224461 |
atttttatttttattttcaatacaattattcaattaaacaagggaaatgtacacaaagcatacaagagccatattcttctttaacctagaaaaaaaagag |
42224560 |
T |
|
| Q |
217 |
agaaaattcttgccccaacatggcattacaggcacaaatcaatnnnnnnnntcttaaatatgataaaatatttagcgcttccttaattttttcataactt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42224561 |
agaaaattcttgccccaacatggcattacaggcacaaatcaataaaaaaaatcttaaatatgataaaatatttagtgcttccttaattttttcataactt |
42224660 |
T |
|
| Q |
317 |
caacatttattgtcctcgtataagaataat |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
42224661 |
caacatttattgtcctcgtataagaataat |
42224690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 36675453 - 36675385
Alignment:
| Q |
47 |
gctaggtatggtgctggtgagaattgctccacagatcctttcttccatatcgcaataaaagttggcctg |
115 |
Q |
| |
|
|||||||||||| | |||||| |||| ||||| ||||||||||| |||||| ||| ||| ||||||||| |
|
|
| T |
36675453 |
gctaggtatggtacgggtgagtattgttccactgatcctttcttgcatatcccaacaaatgttggcctg |
36675385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 36685535 - 36685467
Alignment:
| Q |
47 |
gctaggtatggtgctggtgagaattgctccacagatcctttcttccatatcgcaataaaagttggcctg |
115 |
Q |
| |
|
|||||||||||| | |||||| |||| ||||| ||||||||||| |||||| ||| ||| ||||||||| |
|
|
| T |
36685535 |
gctaggtatggtacgggtgagtattgttccactgatcctttcttgcatatcccaacaaatgttggcctg |
36685467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University