View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_high_3 (Length: 632)
Name: NF1858_high_3
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 96 - 588
Target Start/End: Complemental strand, 9452368 - 9451879
Alignment:
| Q |
96 |
tagatgctccttgtcaacaacagcacatgcaactctattccttaggttcaattttgacgtgcaccatctttgaaggttgtgtaacagaccttaaaatcgg |
195 |
Q |
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||||||||| | |||||||||| || | ||||||||||||||||||||||||||||||| ||||||||||||| | || | |||| ||||||||||||| |
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| T |
9452368 |
tagatgctcttcgtcaacaacaacatgttcaactctattccttaggttcaattttgacgttcaccatctttgaatgatgcgcaacaaaccttaaaatcgg |
9452269 |
T |
|
| Q |
196 |
cgggatattcatcatccttgtttgcctttatgaaaagnnnnnnnnnnncactataagatgctaatgtaataataattagtaattcgagnnnnnnntgttc |
295 |
Q |
| |
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||||||||||||||||||||| ||| |||||||||| | ||||| | |||||||||||||||||||| || ||||| |
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| T |
9452268 |
cgggatattcatcatccttgtctgcatttatgaaaacaaaaaaaaaaagatactaagacaca---gtaataataattagtaattcaagaaaaaa-tgttc |
9452173 |
T |
|
| Q |
296 |
agaacattgctctatcaaattccttttttatttacttttcacatttcaatcatgtactaccctttaaggcaatgatatctggaaaaggcatggcaacgac |
395 |
Q |
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||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
9452172 |
agaacattgctctatcaaaatctttttttatttccttttcacatttcaatcatgtactaacctttaaggcaatgatatctggaaaaggcatggcaactac |
9452073 |
T |
|
| Q |
396 |
agaaaaattacggtaaaaggcatggtaacggcaaaacatctcttccgacagaacaatttatatagctatgtggaaaaggcatggcaacggaag-aaaaat |
494 |
Q |
| |
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||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| || |||||| |
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| T |
9452072 |
agaaaaattacggtaaaaggcatggcaatggcaaaacatctcttatgacagaacaatttatatagctatctggaaaaggcatggcaacatcagaaaaaat |
9451973 |
T |
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| Q |
495 |
tacggtaaaagaagaaatagataccagtaaggcaatgataagaaagtaatgcttcactattaccttagaagaataacatgcattgagaagaaca |
588 |
Q |
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| T |
9451972 |
tacggtaaaagaagaaatagataccagtaaggcaatgataagaaagtaatgcttcactattaccttaggagaataacatgaattgagaagaaca |
9451879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 96 - 425
Target Start/End: Original strand, 21547109 - 21547436
Alignment:
| Q |
96 |
tagatgctccttgtcaacaacagcacatgcaactctattccttaggttcaattttgacgtgcaccatctttgaaggttgtgtaacagaccttaaaatcgg |
195 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21547109 |
tagatgctcctcgtcaacaacagcacatgcaactctaatccttaggttcaattttgacgtgcaccatctttgaaggttgtgtaacagaccttaaaatcgg |
21547208 |
T |
|
| Q |
196 |
cgggatattcatcatccttgtttgcctttatgaaaagnnnnnnnnnnncactataagatgctaatgtaataataattagtaattcgagnnnnnnntgttc |
295 |
Q |
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| T |
21547209 |
caggatattcatcatccttgtttgcctttatgaaaag-aaaaaaaaaacactataagacactacagtaataataattagtaattcaagaaaaaaatgttc |
21547307 |
T |
|
| Q |
296 |
agaacattgctctatcaaattccttttttatttacttttcacatttcaatcatgtactaccctttaaggcaatgatatctggaaaaggcatggcaacgac |
395 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
21547308 |
agaacattgctctatcaaattccttttttatttac-tttcacatttcaatcatgtacaaccctttaagggaatgatatctggaaaaggcatggcaacgac |
21547406 |
T |
|
| Q |
396 |
agaaaaattacggtaaaaggcatggtaacg |
425 |
Q |
| |
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| T |
21547407 |
agaaaaattacggtaaaaggcatggcaacg |
21547436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 433 - 618
Target Start/End: Original strand, 21547833 - 21548023
Alignment:
| Q |
433 |
atctcttccgacagaacaatttatatagctatgtggaaaaggca-----tggcaacggaagaaaaattacggtaaaagaagaaatagataccagtaaggc |
527 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21547833 |
atctcttccgacagaacaatttatatagctatgtggaaaaggcatggcatggcaacggaagaaaaattacggtaaaagaagaaatagataccagtaaggc |
21547932 |
T |
|
| Q |
528 |
aatgataagaaagtaatgcttcactattaccttagaagaataacatgcattgagaagaacatactgcctgatataccttgctgtcaagagt |
618 |
Q |
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| T |
21547933 |
aatgataagaaagtaatgcttcactattaccttagaagaataacatgcattgagaagaacatactgcctgatataccttgctgtcaagagt |
21548023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 378 - 438
Target Start/End: Original strand, 21547421 - 21547481
Alignment:
| Q |
378 |
aaaaggcatggcaacgacagaaaaattacggtaaaaggcatggtaacggcaaaacatctct |
438 |
Q |
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| T |
21547421 |
aaaaggcatggcaacgacagaaaaattacggtaaaaggcatggtaacggcaaaacatctct |
21547481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 21547022 - 21547059
Alignment:
| Q |
9 |
gagatgaacagaacagaaacaaccatggtaattgttgt |
46 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
21547022 |
gagatgaacagaacagaaacaaccatggtaattgttgt |
21547059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 505
Target Start/End: Original strand, 21547386 - 21547425
Alignment:
| Q |
466 |
tggaaaaggcatggcaacggaagaaaaattacggtaaaag |
505 |
Q |
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| T |
21547386 |
tggaaaaggcatggcaacgacagaaaaattacggtaaaag |
21547425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 505
Target Start/End: Original strand, 21547421 - 21547457
Alignment:
| Q |
469 |
aaaaggcatggcaacggaagaaaaattacggtaaaag |
505 |
Q |
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|||||||||||||||| ||||||||||||||||||| |
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| T |
21547421 |
aaaaggcatggcaacgacagaaaaattacggtaaaag |
21547457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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