View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_high_33 (Length: 332)
Name: NF1858_high_33
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 48 - 327
Target Start/End: Complemental strand, 1356406 - 1356133
Alignment:
| Q |
48 |
aacaagaacaccgttctctttctcctaacaaacaatattcgtatctttcaataataaggtacaaaattaaactattacaagcaaatacaaaaggcacaaa |
147 |
Q |
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| T |
1356406 |
aacaagaacaccgttctctttctcctaacaa----tattcgtatctttcaataataaggtagaaaattaaactattacaagcaaatacaaaaggcacaaa |
1356311 |
T |
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| Q |
148 |
ttaaaggaaaaatgtgattttcatgtgcattgtcatgaattaattaattttaacttttagcatcaagata---tcattgtctgcatttgacccatgcatt |
244 |
Q |
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| T |
1356310 |
-----ggaaaaatgtgattttcatgtgcattgtcatgaattaattaatttgaacttttagcatcaagatagtatcattgtctgcatttgactcatgcatt |
1356216 |
T |
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| Q |
245 |
gattagttaaagataacaaactaactaacacataacaatcttaattaattcattttacttaaggttgattttcatttgattct |
327 |
Q |
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| T |
1356215 |
gattagttaaagataacaaactaactaacacataacaatcttaattaattcattttacttaaggttgattttcattttattct |
1356133 |
T |
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