View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_high_34 (Length: 331)
Name: NF1858_high_34
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 317
Target Start/End: Complemental strand, 26831714 - 26831415
Alignment:
| Q |
17 |
agagatgtcactcaattatcattttacagttgaacaagaagttggatcttcctcttacgccttctttggcttcaacggtaaaatccctaatctaatctca |
116 |
Q |
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| T |
26831714 |
agagatgtcactcaattatcattttacagttgaacaagaagttggatcttcctcttacgccttctttggcttcaacggtaaaacccctaatctaatctca |
26831615 |
T |
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| Q |
117 |
tcgcatggctaaaacagtttcatccattttccttctaaattgtgattatagtcatagttatggttacgtacactgcaagctttgatactacaataataca |
216 |
Q |
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| T |
26831614 |
tcgcatggctaaaacagtttcatccattttccttctgaattgtgattatagtcatagttatggttacatacgctgcaagctttgatactacgataataca |
26831515 |
T |
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| Q |
217 |
aacaaatgtggctgatatgcggccacaattatagctgtgatgtcgttgtagaaaccattaattaagatgnnnnnnnatataaattatgtgcatgacacag |
316 |
Q |
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| T |
26831514 |
aacaaatgtggctgatatgcggccacaattatagctgtgatgtcattgtagaaaccattaattacgatg-ttttttatataaattatgtgcatgacacag |
26831416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 26817960 - 26817885
Alignment:
| Q |
21 |
atgtcactcaattatcattttacagttgaacaagaagttggatcttcctcttacgccttctttggcttcaacggta |
96 |
Q |
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| T |
26817960 |
atgtcactcgattatcattttaaggtagaacaagaagtgggatcttccgcttacgccttctttggcttcaatggta |
26817885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 26785072 - 26784994
Alignment:
| Q |
19 |
agatgtcactcaattatcattttacagttgaacaagaagttggatcttcctcttacgccttctttggcttcaacggtaa |
97 |
Q |
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| T |
26785072 |
agatgtcacttgattatcattttacggttgaacaagaagtggggtcttctacttatgccttctttggcttcaatggtaa |
26784994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 26791273 - 26791197
Alignment:
| Q |
21 |
atgtcactcaattatcattttacagttgaacaagaagttggatcttcctcttacgccttctttggcttcaacggtaa |
97 |
Q |
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|||||||| |||| ||||||| || ||||||||||| || |||||| |||| ||||||||||||||||| ||||| |
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| T |
26791273 |
atgtcacttgattaccattttaaggtggaacaagaagtagggtcttccacttatgccttctttggcttcaatggtaa |
26791197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 41919508 - 41919589
Alignment:
| Q |
17 |
agagatgtcactcaattatcattttacagttgaacaagaagttggatcttcctcttacgccttctttggcttcaacggtaaa |
98 |
Q |
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|||||||||||| |||| |||||||| || ||||||||||| || |||||| |||| |||||||||||||||||||||||| |
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| T |
41919508 |
agagatgtcactagattaccattttactgtggaacaagaagtggggtcttccacttatgccttctttggcttcaacggtaaa |
41919589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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