View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_high_39 (Length: 299)
Name: NF1858_high_39
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_high_39 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 9 - 299
Target Start/End: Original strand, 48043227 - 48043517
Alignment:
| Q |
9 |
gaagaatattgtgaacctgtatggtaggtaaataagtataatactctctttgatacctttgttggtaaacctagttatcacaggctatcagattggattt |
108 |
Q |
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| T |
48043227 |
gaagaatattgtgaacctgtatggtaggtaaataagtataatactctctttgatacctttgttggtaaacctagttattacaagctatcagattggattt |
48043326 |
T |
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| Q |
109 |
aaagccagtcaaatatggaaaagaaaaactagtagtatgatacaccaatatcatcccttcgatgaccttgatatcagtctgcaatgtaacattcaaatag |
208 |
Q |
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| T |
48043327 |
aaagccagtcaaatatggaaaagaaaaactagtagtatgatacaccaatatcatcccttcaatgaccttgatatcagtctgcaatgtaacattcaaatag |
48043426 |
T |
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| Q |
209 |
attcatatggcagaagttgagagcttcagttgtttgctttagaatgttttacaaaccggcaaattactgagtcaatgttgtcggagttttt |
299 |
Q |
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| T |
48043427 |
attcatatggcagaagttgagagcttcagttgtttgctttagaatgttttacaaaccgacaaattactgagtcaatgttgttggagttttt |
48043517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 151 - 299
Target Start/End: Original strand, 48056587 - 48056735
Alignment:
| Q |
151 |
caccaatatcatcccttcgatgaccttgatatcagtctgcaatgtaacattcaaatagattcatatggcagaagttgagagcttcagttgtttgctttag |
250 |
Q |
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| T |
48056587 |
caccaatatcatcccttcaatgaccttgatatcagtctgcaatgtaacattcaaatagaatcctagggcagaagttgagagcttcagttctttgcgttag |
48056686 |
T |
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| Q |
251 |
aatgttttacaaaccggcaaattactgagtcaatgttgtcggagttttt |
299 |
Q |
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| T |
48056687 |
aatgttttacaaaccaacaaataactgagtcgatgttggtggagttttt |
48056735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 152 - 259
Target Start/End: Original strand, 48051312 - 48051419
Alignment:
| Q |
152 |
accaatatcatcccttcgatgaccttgatatcagtctgcaatgtaacattcaaatagattcatatggcagaagttgagagcttcagttgtttgctttaga |
251 |
Q |
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||||| |||||| |||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
48051312 |
accaacatcatctcttcaaagaccttgatatcagtctgcaatgtaacattcaaattgattcatatggcaagagttgagagcttcaattgtttgctttaga |
48051411 |
T |
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| Q |
252 |
atgtttta |
259 |
Q |
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|||||||| |
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| T |
48051412 |
atgtttta |
48051419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 160 - 284
Target Start/End: Original strand, 48037329 - 48037454
Alignment:
| Q |
160 |
catcccttcgatgaccttgatatcagtctgcaatgtaacattcaaatagattcatatggcagaag-ttgagagcttcagttgtttgctttagaatgtttt |
258 |
Q |
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||||||| | ||||| ||||||||||||||||||| |||||||||||||||||| | |||||||| |||||||||| |||| |||||||||||||| ||| |
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| T |
48037329 |
catccctaccatgacattgatatcagtctgcaatgcaacattcaaatagattcacagggcagaagtttgagagcttaagttctttgctttagaatgcttt |
48037428 |
T |
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| Q |
259 |
acaaaccggcaaattactgagtcaat |
284 |
Q |
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| T |
48037429 |
acaaatcaactaataactgagtcaat |
48037454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 48051132 - 48051209
Alignment:
| Q |
9 |
gaagaatattgtgaacctgtatggtaggtaaataagtataatactctctttgatacctttgttggtaaacctagttatcaca |
90 |
Q |
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| T |
48051132 |
gaagaatgttgtgaacctgaatggta----aataagtataatactctctttgatacctttgttggtaaaccaagctatcaca |
48051209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 48045200 - 48045258
Alignment:
| Q |
173 |
accttgatatcagtctgcaatgtaacattcaaatagattcatatggcagaagttgagag |
231 |
Q |
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| T |
48045200 |
accttgatatcaatctgcaatgcaacattcaaatagattcatagggcaggagttgagag |
48045258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 48056456 - 48056532
Alignment:
| Q |
9 |
gaagaatattgtgaacctgtatggtaggtaaataagtataatactctctttgatacctttgttggtaaacctagttatca |
88 |
Q |
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||||||||||||||| ||| |||||| ||| |||||| | |||||||||||||||||| ||||||||| |||||||| |
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| T |
48056456 |
gaagaatattgtgaatctgaatggtatataagtaagtaga---ctctctttgatacctttgatggtaaaccaagttatca |
48056532 |
T |
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