View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1858_high_40 (Length: 297)

Name: NF1858_high_40
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1858_high_40
NF1858_high_40
[»] chr2 (1 HSPs)
chr2 (1-297)||(28832775-28833071)


Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 28833071 - 28832775
Alignment:
Q  1 aaaggtttcagacaacaatgctttattatgtttcttttgtttggggatttaaaaccttagtgactaagcttgttcaaattgtgatccacaaccacctaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28833071 aaaggtttcagacaacaatgctttattatgtttcttttgtttggggatttaaaaccttagtgactaagcttgttcaaattgtgatccacaaccacctaat 28832972  T
Q  101 atatacatgtcaattctagttcaacttacttcaacnnnnnnnncttctaaattgtgagaatgaaccaattatttacaatttaattgataacttcattata 200  Q
    |||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28832971 atatacatgtcaattctagttcaacttacttcaacttttttttcttctaaattgtgagaatgaaccaattatttacaatttaattgataacttcattata 28832872  T
Q  201 gaggtttgattattttcaatatagttatagtagtaggtgataattagtggtacattattctaaatatcaatatcttgaaaggaacgtacatggtacc 297  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28832871 gaggtttaattattttcaatatagttatagtagtaggtgataattagtggtacattattctaaatatcaataacttgaaaggaacgtacatggtacc 28832775  T

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