View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1858_high_47 (Length: 279)
Name: NF1858_high_47
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_high_47 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 261
Target Start/End: Original strand, 16237209 - 16237453
Alignment:
| Q |
17 |
atactgacggagcgtgtaaggatggtagcatcgcggggtgtggaggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttagg |
116 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16237209 |
atactgacggagcgtgtaaggatggtagtatcgcggggtgtggaggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttagg |
16237308 |
T |
|
| Q |
117 |
gaagtgtgatgcttttattgcagagctatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16237309 |
gaagtgtgatgcttttattgcagagctatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattct |
16237408 |
T |
|
| Q |
217 |
ctggtggttgtgaatattattacgagtgggaaggaaagcaatgcg |
261 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16237409 |
ctggtggttgtgaatattattacgagtgggaaggaaagcaatgcg |
16237453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 28575235 - 28574991
Alignment:
| Q |
17 |
atactgacggagcgtgtaaggatggtagcatcgcggggtgtggaggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttagg |
116 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28575235 |
atactgacggagcgtgtaaggatggtagtatcgcggggtgtggaggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttagg |
28575136 |
T |
|
| Q |
117 |
gaagtgtgatgcttttattgcagagctatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattct |
216 |
Q |
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| T |
28575135 |
gaagtgtgatgcttttattgcagagctatggggagttttggaaggtctccgatgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattct |
28575036 |
T |
|
| Q |
217 |
ctggtggttgtgaatattattacgagtgggaaggaaagcaatgcg |
261 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28575035 |
ctggtggttgtgaatattattacgagtgggaaggaaagcaatgcg |
28574991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 251
Target Start/End: Complemental strand, 38658365 - 38658266
Alignment:
| Q |
152 |
ttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgtgaatattattacgagtgggaagga |
251 |
Q |
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|||||||||||||||||||||||||||| |||||||| | ||||| |||||| | ||||||| | |||| || ||||| || |||| || |||||||| |
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| T |
38658365 |
ttttggaaggtctccggtgtgcgaaacgaatggggtttatagcagttgaattacaagtggattttttggttgtggtgaacataattatgaaggggaagga |
38658266 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 20633427 - 20633183
Alignment:
| Q |
17 |
atactgacggagcgtgtaaggatggtagcatcgcggggtgtggaggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttagg |
116 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
20633427 |
atactgacggagcttgtaaggatggtagtatcgcggggtgtggaggacttatcagaggttcggaaggcgagtggttagcggggttctccaaatttttagg |
20633328 |
T |
|
| Q |
117 |
gaagtgtgatgcttttattgcagagctatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20633327 |
gaagtgtgatgcttttattgcagagctatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattct |
20633228 |
T |
|
| Q |
217 |
ctggtggttgtgaatattattacgagtgggaaggaaagcaatgcg |
261 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||| |
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|
| T |
20633227 |
ttggtggttgtgaatattattacgagtgagagggaaagcaatgcg |
20633183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 48823458 - 48823214
Alignment:
| Q |
17 |
atactgacggagcgtgtaaggatggtagcatcgcggggtgtggaggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttagg |
116 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
48823458 |
atactgacggagcttgtaaggatggtagtatcgcggggtgtggaggacttatcagaggttcggaaggcgagtggttagcggggttctccaaatttttagg |
48823359 |
T |
|
| Q |
117 |
gaagtgtgatgcttttattgcagagctatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattct |
216 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||| |
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| T |
48823358 |
gaagagtgatgcttttattgcagagctatggggagttttggaaggtctccggtgtgcaaaacgtacagggttcactgcagtagaattaaatatggattct |
48823259 |
T |
|
| Q |
217 |
ctggtggttgtgaatattattacgagtgggaaggaaagcaatgcg |
261 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
48823258 |
ttggtggttgtgaatattattacgagtgggggggaaagcaatgcg |
48823214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 71 - 261
Target Start/End: Complemental strand, 38833471 - 38833281
Alignment:
| Q |
71 |
gaggttcgcaaggcgagtggttagcggggttctccaaatttttagggaagtgtgatgcttttattgcagagctatggggagttttggaaggtctccggtg |
170 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38833471 |
gaggttcggaaggcgagtggttagcggggttctccaaatttttagggaagtgtgatgcttttattgcagagctatggggagttttggaaggtctccggtg |
38833372 |
T |
|
| Q |
171 |
tgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgtgaatattattacgagtgggaaggaaagcaatgcg |
261 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38833371 |
tgcaaaacgtatggggttcactgcagtagaattaaatgtggattctttggtggttgtgaatattattacgagtgggaaggaaagcaatgcg |
38833281 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 18185400 - 18185518
Alignment:
| Q |
143 |
tatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgtgaatattattacgag |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
18185400 |
tatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctttggtggttgtgaatattattacaag |
18185499 |
T |
|
| Q |
243 |
tgggaaggaaagcaatgcg |
261 |
Q |
| |
|
||||||||||||||||||| |
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| T |
18185500 |
tgggaaggaaagcaatgcg |
18185518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 38835921 - 38835871
Alignment:
| Q |
17 |
atactgacggagcgtgtaaggatggtagcatcgcggggtgtggaggactta |
67 |
Q |
| |
|
||||| ||| ||| |||||||||||||| |||||||||||||||||||||| |
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|
| T |
38835921 |
atactaacgaagcttgtaaggatggtagtatcgcggggtgtggaggactta |
38835871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 39180666 - 39180784
Alignment:
| Q |
143 |
tatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgtgaatattattacgag |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39180666 |
tatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctttggtggttgtgaatattattacgag |
39180765 |
T |
|
| Q |
243 |
tgggaaggaaagcaatgcg |
261 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
39180766 |
tgggaaggaaagcaatgcg |
39180784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 31 - 260
Target Start/End: Original strand, 18568658 - 18568887
Alignment:
| Q |
31 |
tgtaaggatggtagcatcgcggg-gtgtggaggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttagggaagtgtgatgct |
129 |
Q |
| |
|
||||||||||||| || ||||| | ||||| | ||||| |||||| | ||||||| ||||||| |||||||| ||||||||| ||||||||| ||| |
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|
| T |
18568658 |
tgtaaggatggtaatattgcgggagcgtggatggcttattagaggtttgaaaggcgaatggttagtggggttcttcaaatttttggggaagtgtagcgct |
18568757 |
T |
|
| Q |
130 |
tttattgcagagctatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgtga |
229 |
Q |
| |
|
||| |||| |||||||||| |||||||||||||||| | ||||| |||| ||||||||||||||||||| | ||||||||||||||| |||||||| | | |
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|
| T |
18568758 |
tttgttgcggagctatgggaagttttggaaggtctc-gatgtgcaaaacatatggggttcactgcagtatacttaaatgtggattctttggtggttataa |
18568856 |
T |
|
| Q |
230 |
atattattacgagtgggaaggaaagcaatgc |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
18568857 |
atattattacgagtgggaaggaaagcaatgc |
18568887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 5699423 - 5699476
Alignment:
| Q |
125 |
atgcttttattgcagagctatggggagttttggaaggtctccggtgtgcgaaac |
178 |
Q |
| |
|
|||||||||| || ||| | ||||||||||||||||||||||| | |||||||| |
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|
| T |
5699423 |
atgcttttatagcggagttgtggggagttttggaaggtctccgatatgcgaaac |
5699476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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