View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1858_high_5 (Length: 583)

Name: NF1858_high_5
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1858_high_5
NF1858_high_5
[»] chr7 (5 HSPs)
chr7 (428-582)||(27658121-27658275)
chr7 (1-87)||(33602269-33602355)
chr7 (153-266)||(33602421-33602528)
chr7 (291-350)||(27656844-27656903)
chr7 (1-45)||(33602133-33602177)
[»] chr5 (5 HSPs)
chr5 (428-582)||(37605789-37605941)
chr5 (440-567)||(33360981-33361104)
chr5 (440-567)||(5742432-5742556)
chr5 (287-350)||(37606029-37606092)
chr5 (288-330)||(30891764-30891806)
[»] scaffold0856 (1 HSPs)
scaffold0856 (440-567)||(1228-1351)
[»] chr6 (2 HSPs)
chr6 (440-567)||(18085257-18085380)
chr6 (287-350)||(31559483-31559546)
[»] chr4 (1 HSPs)
chr4 (288-325)||(7453567-7453604)


Alignment Details
Target: chr7 (Bit Score: 143; Significance: 8e-75; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 428 - 582
Target Start/End: Original strand, 27658121 - 27658275
Alignment:
Q  428 gtttcgttttccttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatct 527  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27658121 gtttcgttttccttctctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatct 27658220  T
Q  528 ttgtacagtaccaccctctcatgctattttcggtcactccgcctgtctctgctgc 582  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  27658221 ttgtacagtgccaccctctcatgctattttcggtcactccgcctgtctcggctgc 27658275  T

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Target: chr7; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 33602269 - 33602355
Alignment:
Q  1 acgaaattgctctgttacgttgattttccaaatccaaaactacaagcaaataataaacacttaccaatttcggattcaccattcatg 87  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33602269 acgaaattgctctgttacgttgattttccagatccaaaactacaagcaaataataaacacttaccaatttcggattcaccattcatg 33602355  T

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Target: chr7; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 153 - 266
Target Start/End: Original strand, 33602421 - 33602528
Alignment:
Q  153 aaatgaaatatggtttgttatatggcggcaaaagtgaataagaaacggttagaagtatgagctggcaaatagcgaaatagtgaaatgaaatattaaacga 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||       ||||||||||||||||||||    
T  33602421 aaatgaaatatggtttgttatatggcggcaaaagtgaataagaaacgattagaagtatgagctggcaaatagc------atgaaatgaaatattaaacga 33602514  T
Q  253 ttaaatatgttttt 266  Q
    ||||||||||||||    
T  33602515 ttaaatatgttttt 33602528  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 291 - 350
Target Start/End: Original strand, 27656844 - 27656903
Alignment:
Q  291 aatgataagtaaacacaaaaatacaaacacaaaaatgacaccatacactattactcaata 350  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||| || |||||||    
T  27656844 aatgataagtaaacacaaaaatacaaacacaaaaatgataccatagactgttcctcaata 27656903  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 33602133 - 33602177
Alignment:
Q  1 acgaaattgctctgttacgttgattttccaaatccaaaactacaa 45  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  33602133 acgaaattgctctgttacgttgattttccagatccaaaactacaa 33602177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 428 - 582
Target Start/End: Complemental strand, 37605941 - 37605789
Alignment:
Q  428 gtttcgttttccttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatct 527  Q
    |||||||||||||||||||| ||||| ||||||||||||||| |||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||    
T  37605941 gtttcgttttccttccctctttctgaatcactcatttcctatgagcaagaaaaaatcatctttcattcactcataggttctcgtcactccttcttcatct 37605842  T
Q  528 ttgtacagtaccaccctctcatgctattttcggtcactccgcctgtctctgctgc 582  Q
    ||||||||| |||||  |||||||||||||||||| |||| ||| |||| |||||    
T  37605841 ttgtacagtgccacc--ctcatgctattttcggtcgctccacctatctcggctgc 37605789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 440 - 567
Target Start/End: Complemental strand, 33361104 - 33360981
Alignment:
Q  440 ttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatctttgtacagtacc 539  Q
    |||||||| ||||||||| |||||||| || | ||||||||||| |||||||||||||| |||  ||||||||||||   |||||||||||| |||| ||    
T  33361104 ttccctctttctgattcagtcatttcccattaccaagaacaaataatctttcattcactaataatttctcgtcactc---cttcatctttgtgcagtgcc 33361008  T
Q  540 accctctcatgctattttcggtcactcc 567  Q
    | |||||||||||| |||||||||||||    
T  33361007 agcctctcatgcta-tttcggtcactcc 33360981  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 440 - 567
Target Start/End: Original strand, 5742432 - 5742556
Alignment:
Q  440 ttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatctttgtacagtacc 539  Q
    |||||||| ||||||||||| ||||||||| || |||||| ||| ||||||||||||||  ||| | ||| ||||||   |||||||||||| |||| ||    
T  5742432 ttccctctttctgattcactaatttcctatgagaaagaactaatcatctttcattcactagtagttgctcatcactc---cttcatctttgtgcagtgcc 5742528  T
Q  540 accctctcatgctattttcggtcactcc 567  Q
    ||||||||||||||||| | ||||||||    
T  5742529 accctctcatgctatttccagtcactcc 5742556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 287 - 350
Target Start/End: Complemental strand, 37606092 - 37606029
Alignment:
Q  287 caggaatgataagtaaacacaaaaatacaaacacaaaaatgacaccatacactattactcaata 350  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||    
T  37606092 caggaatgataagtaaacacaataatacaaacacaaatatgacaccatacactgttactcaata 37606029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 330
Target Start/End: Original strand, 30891764 - 30891806
Alignment:
Q  288 aggaatgataagtaaacacaaaaatacaaacacaaaaatgaca 330  Q
    ||||||||||||| |||||||||||||||||||||||| ||||    
T  30891764 aggaatgataagtgaacacaaaaatacaaacacaaaaacgaca 30891806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0856 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 440 - 567
Target Start/End: Complemental strand, 1351 - 1228
Alignment:
Q  440 ttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatctttgtacagtacc 539  Q
    |||||||| ||||||||| |||||||| || | ||||||||||| |||||||||||||| |||  ||||||||||||   |||||||||||| |||| ||    
T  1351 ttccctctttctgattcagtcatttcccatgatcaagaacaaatcatctttcattcactaataatttctcgtcactc---cttcatctttgtgcagtgcc 1255  T
Q  540 accctctcatgctattttcggtcactcc 567  Q
    | |||||||||||| |||||||||||||    
T  1254 agcctctcatgcta-tttcggtcactcc 1228  T

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Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 440 - 567
Target Start/End: Complemental strand, 18085380 - 18085257
Alignment:
Q  440 ttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatctttgtacagtacc 539  Q
    |||||||| ||||||||| |||||||| || | ||||||||||| |||||||||||||| |||  ||||||||||||   |||||||||||| |||| ||    
T  18085380 ttccctctttctgattcagtcatttcccattaccaagaacaaataatctttcattcactaataatttctcgtcactc---cttcatctttgtgcagtgcc 18085284  T
Q  540 accctctcatgctattttcggtcactcc 567  Q
    | |||||||||||| |||||||||||||    
T  18085283 agcctctcatgcta-tttcggtcactcc 18085257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 287 - 350
Target Start/End: Original strand, 31559483 - 31559546
Alignment:
Q  287 caggaatgataagtaaacacaaaaatacaaacacaaaaatgacaccatacactattactcaata 350  Q
    |||||||||||||||||||||| |||||||||| ||| ||||||||||||||| ||||||||||    
T  31559483 caggaatgataagtaaacacaataatacaaacataaatatgacaccatacactgttactcaata 31559546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 288 - 325
Target Start/End: Original strand, 7453567 - 7453604
Alignment:
Q  288 aggaatgataagtaaacacaaaaatacaaacacaaaaa 325  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  7453567 aggaatgataagtgaacacaaaaatacaaacacaaaaa 7453604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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