View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_high_50 (Length: 261)
Name: NF1858_high_50
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_high_50 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 33040816 - 33041051
Alignment:
| Q |
1 |
ttcttagtaacagatttctaggtagactgttttaaagagtgtttagagtagaaataaaagaagtaaccaatggagattaggtttagtggaagggactagt |
100 |
Q |
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| T |
33040816 |
ttcttagtaacagatttctaggtagactgttttaaagagtgtttagagtagaa---------gtaaccaatgaagattaggtttagtggaagggactagt |
33040906 |
T |
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| Q |
101 |
cttctataatgtggcagagtaaaatttaaaatagctgaaataaacatattagagttgacactcaagagagagaactaattgtgattgcaagatgcatttc |
200 |
Q |
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| T |
33040907 |
cttctataatgtggcagagtaaaatttaaaatagctgaaataaacatattagagttgacactcaagagagaaaattaattgtgattgcaagatgcatttc |
33041006 |
T |
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| Q |
201 |
actattgataatccgaactttacaatgaacgaagagtgatcaaat |
245 |
Q |
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| T |
33041007 |
actattgatcatctgaactttacaatgaacgaagagtgatcaaat |
33041051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 33043035 - 33043088
Alignment:
| Q |
156 |
tgacactcaagagagagaactaattgtgattgcaagatgcatttcactattgat |
209 |
Q |
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|||||||| ||||| | ||||| |||||||||||| |||||||||| ||||||| |
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| T |
33043035 |
tgacactcgagagaaaaaactagttgtgattgcaatatgcatttcattattgat |
33043088 |
T |
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