View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_high_56 (Length: 254)
Name: NF1858_high_56
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_high_56 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 38723252 - 38723484
Alignment:
| Q |
1 |
atatttaattctatctactaattttgttcaaagagtagaaaaaataaaatgagcatacccttcaacactgtcatgcgtcagaacatatactaagtctgtc |
100 |
Q |
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| T |
38723252 |
atatttaattctatctactaattttgttcaaagagtagaaaaaataaaatgagcatacccttcaacactgtcatgcgtcagaacatatacta-gtttgtc |
38723350 |
T |
|
| Q |
101 |
tctatttacttataaatgagggttagtttggtaaatggcaatgagtattaacatttaatgtgtatctatatatttatgtgtgtatgaccttatatatatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38723351 |
tctatttacttataaatgagggttagtttggtaaatggcaatgagcattaacatttaatgtgtatctatatatttatgtgtgtatgacct----tatatt |
38723446 |
T |
|
| Q |
201 |
ctagtgcactgtcttgaaacaaatcgcatagtaatatt |
238 |
Q |
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|||||||||||||||||||||||||| ||||||||||| |
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| T |
38723447 |
ctagtgcactgtcttgaaacaaatcgtatagtaatatt |
38723484 |
T |
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