View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_high_58 (Length: 253)
Name: NF1858_high_58
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_high_58 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 253
Target Start/End: Original strand, 38723014 - 38723256
Alignment:
| Q |
11 |
cacagacctgagtgaccactacaccaaatttgagcattttgaaaatggattacaggtatgaacttaaccaattttcttccttctgtgccaaaatccatcc |
110 |
Q |
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| T |
38723014 |
cacagacctgagtgaccactacaccaaatttgagcattttgaaaatggattacagctatgaacttaaccaattttcttccttctgtgccaaaatccatcc |
38723113 |
T |
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| Q |
111 |
ccaatgtcaatggattatcttcaatctgatatgtacattaattgattacaccttatttgatcatagtttgaaattggggtcccataatacaactactcca |
210 |
Q |
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| T |
38723114 |
ccaatgtcaatggattatcttcaatctgatatgtacattaattgattacaccttatttgatcatagtttgaaattggggtcccataatacaattactcca |
38723213 |
T |
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| Q |
211 |
gttcctgatatagttccacaaaaaattagtgcccacttatatt |
253 |
Q |
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| T |
38723214 |
gttcctgatatagttccacaaaaaattagtgcccacttatatt |
38723256 |
T |
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