View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_high_61 (Length: 250)
Name: NF1858_high_61
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_high_61 |
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| [»] scaffold0455 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 41419830 - 41420069
Alignment:
| Q |
1 |
cgtgaataatcactctccatagttccaattctgattcaaatgtagcttccttaagaagtcctctcaaatccatccacacaaaaagtccaccgttactttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41419830 |
cgtgaataatcactctccatagttccaattctgattcaaatgtagcttccttaagaagtcctctcaaatccatccacacaaaaagtccaccgttactttg |
41419929 |
T |
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| Q |
101 |
taaacaattaattccaactttggttaatccactagtgaaaattttgtacctttgtgctaacctctttgcactttcagtaagaaacttttcaacgaactcg |
200 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41419930 |
taaacaattaattccaactttggttaatccactggtgaaaattctgtacctttgtgctaacctctttgcactttcagtaagaaactttttaacgaactcg |
41420029 |
T |
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| Q |
201 |
tcatcagacaacatttttgccatcaagtattgtgtctgtg |
240 |
Q |
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|||||||||| |||||| |||||||||||||||||||||| |
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| T |
41420030 |
tcatcagacagcattttcgccatcaagtattgtgtctgtg |
41420069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0455 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: scaffold0455
Description:
Target: scaffold0455; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 8314 - 8518
Alignment:
| Q |
1 |
cgtgaataatcactctccatagttccaattctgattcaaatgtagcttccttaagaagtcctctcaaatccatccacacaaaaagtccaccgttactttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
8314 |
cgtgaataatcactctccatagttccaattctgattcaaatgtagcttccttaagaagtcctctcagatccatccacacaaaaagtccaccgttactttg |
8413 |
T |
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| Q |
101 |
taaacaattaattccaactttggttaatccactagtgaaaattttgtacctttgtgctaacctctttgcactttcagtaagaaacttttcaacgaactcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8414 |
taaacaattaattccaactttggttaatccactagtgaaaattttgtacctttgtgctaacctctttgcactttcagtaagaaacttttcaacgaactcg |
8513 |
T |
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| Q |
201 |
tcatc |
205 |
Q |
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||||| |
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| T |
8514 |
tcatc |
8518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 28129727 - 28129931
Alignment:
| Q |
1 |
cgtgaataatcactctccatagttccaattctgattcaaatgtagcttccttaagaagtcctctcaaatccatccacacaaaaagtccaccgttactttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28129727 |
cgtgaataatcactctccatagttccaattctgattcaaatgtagcttccttaagaagtcctctcagatccatccacacaaaaagtccaccgttactttg |
28129826 |
T |
|
| Q |
101 |
taaacaattaattccaactttggttaatccactagtgaaaattttgtacctttgtgctaacctctttgcactttcagtaagaaacttttcaacgaactcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28129827 |
taaacaattaattccaactttggttaatccactagtgaaaattttgtacctttgtgctaacctctttgcactttcagtaagaaacttttcaacgaactcg |
28129926 |
T |
|
| Q |
201 |
tcatc |
205 |
Q |
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||||| |
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|
| T |
28129927 |
tcatc |
28129931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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