View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_high_62 (Length: 249)
Name: NF1858_high_62
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_high_62 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 37553361 - 37553594
Alignment:
| Q |
1 |
caaattgtatttctttctcccccattaaattgtagagatagaatattaatcacgggtatgattaacatcatttagaaaaattatgatactnnnnnnngaa |
100 |
Q |
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| T |
37553361 |
caaattgtatttctttctcccccattaaattgtagagatagaatattaatcacgggtatgattaacatcatttagaaaaattatgatattaaagaaagaa |
37553460 |
T |
|
| Q |
101 |
tgtaggcatagtctgcaaacataagtgaagcccaattaagaattatagcccaaaggaaatttnnnnnnnnnnnnnnnngaggtcggcataaataatgaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37553461 |
tgtaggcatagtctgcaaacataagtgaagcccaattaagaattatagcccaaaggaaattttaaaaaaataaaaaaagaggtcggcataaataatgaga |
37553560 |
T |
|
| Q |
201 |
aacacatgaacaaacgagtgaaaaaggacatact |
234 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
37553561 |
aacacatgaacaaacgagtgaaaaaggacatact |
37553594 |
T |
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