View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_high_67 (Length: 244)
Name: NF1858_high_67
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_high_67 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 29293419 - 29293203
Alignment:
| Q |
16 |
atgaagttgatgcggtgagtatttcttctaattcctatttaaatttcaaacttgcaagttgcttcaaccttacaggtgttattttaacatgccaactact |
115 |
Q |
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| T |
29293419 |
atgaagttgatgcggtgagtatttcttctaattcctatttaaatttcaaacttgcaagttgcttcaaccttacaggtgttattttaacatgccaactact |
29293320 |
T |
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| Q |
116 |
ttgttgaggtatacacaacacacatcttgtttcttcaaagtaattgaattattgtttgcaatcgttactttgactacaatattaagattttagaaatctt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29293319 |
ttgttgaggtatacacaacacacatcttgtttcttcaaagtaattgaattattgtttgcaatcgttactttgactacaatattaagattttagaaatctt |
29293220 |
T |
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| Q |
216 |
tgaatgtctaatgtgat |
232 |
Q |
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| T |
29293219 |
tgaatgtctaatgtgat |
29293203 |
T |
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