View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1858_high_69 (Length: 242)
Name: NF1858_high_69
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_high_69 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 212
Target Start/End: Complemental strand, 25579887 - 25579689
Alignment:
| Q |
13 |
cagaaaactaatccacccgtctcatttgccttgatatgatcatgataccaaacaaaatgaagtcggcatcataaaatcataacccttccctaccttcctt |
112 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25579887 |
cagaaaactaatccacccgtctcattt-ccttgatatgatcatgataccaaacaaaatgaagtcggcatcataaaatcataacccttccctaccttcctt |
25579789 |
T |
|
| Q |
113 |
ttcaaaactactataccaaaacacagggtcgaaaaaaggaacatcaatgcattaaaccagccatcaatgcgagtaaagtcctagaattgcagggtgatac |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25579788 |
ttcaaaactactataccaaaacacagggtcgaaaaaaggaacatcaatgcattaaaccagccatcaatgcgagtaaagtcctagaattgcagggtgatac |
25579689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University