View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1858_high_77 (Length: 235)
Name: NF1858_high_77
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_high_77 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 4 - 219
Target Start/End: Original strand, 29071124 - 29071339
Alignment:
| Q |
4 |
ctccaatagcagcccatccacattcaataacaacatccaagaaatagagcattgaaacaagtgcaaaacaagaaaacaacataggaataggtccaaagat |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29071124 |
ctccaatagcagcccatccacattcaataacaacatccaagaaatagagcattgaaacaagtgcaaaacaagaaaacaacataggaataggtccaaagat |
29071223 |
T |
|
| Q |
104 |
ccacatgaaaagagggaaggaaaagtaaaatgcacgcaaaccaagtgaccagaaatagcttccacggttaactgtattggcaacatactcagctgtcagc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29071224 |
ccacatgaaaagagggaaggaaaagtaaaatgcacgcaaaccaagtgaccagaaatagcttccacggttaactgtattggcaacatactcagctgtcagc |
29071323 |
T |
|
| Q |
204 |
ttctgttgtctaaggt |
219 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
29071324 |
ttctgttgtctaaggt |
29071339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University