View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_low_11 (Length: 469)
Name: NF1858_low_11
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_low_11 |
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| [»] scaffold0321 (1 HSPs) |
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Alignment Details
Target: scaffold0321 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 14 - 451
Target Start/End: Complemental strand, 16589 - 16153
Alignment:
| Q |
14 |
tactcaataaatgtatttaatacaaaaatgcttatataaatttttgtgaccgcaaccatgattaatatctataaatatataaagagatggttcgaaaaac |
113 |
Q |
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| T |
16589 |
tactcaataaatgtatttaatacaaaa-tgcttatataaatttttgtgaccgcaaccatgattaatatctataaatatataaagagatggttcgaaaaac |
16491 |
T |
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| Q |
114 |
catcaagataataaatgattgttgaagagcagtacagatataggacgtggaagatcacatgataatgtctagttaaaaatacatgtgtatgaaaaatgca |
213 |
Q |
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| T |
16490 |
catcaagtagataaatgattgttgaagagcagtacaaatataggacgtgaaagatcacatgataatgtctagttaaaaatacatgtgtatgaaaaatgca |
16391 |
T |
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| Q |
214 |
tatgcctatggtataatcatacttcatccacctatgtcaaatcattttcatcaatagactcttcttcagctgcttcgactccactatggcggattctgca |
313 |
Q |
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| T |
16390 |
tatgcctatggtataatcatacttcatccacctatgtcaaatcattttcatcaatagactcttcttcagctgcttcgactccactatggcggattctgca |
16291 |
T |
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| Q |
314 |
gcagtaacccacaaagaacgctgcaatgacaccaatcaccaaaacagcccaacccagacctccgaatgaacttgaggccggtggagaggccggtggaggt |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
16290 |
gcagtaacccacaaagaacgctgcaatgacaccaatcaccaaaacagcccaacccagacctccgaatgaacttgaggccggtggagaggcctgtggaggt |
16191 |
T |
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| Q |
414 |
ggaggaagaggtgacttcatcggtggaggtgcaggaag |
451 |
Q |
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| T |
16190 |
ggaggaagaggtgacttcatcggtggaggtgcaggaag |
16153 |
T |
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