View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_low_13 (Length: 430)
Name: NF1858_low_13
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_low_13 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 2e-84; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 260 - 430
Target Start/End: Original strand, 5943248 - 5943418
Alignment:
| Q |
260 |
aagattcctaactattaaacgtggaacatctttgaaaccacctatatggtggcatatcttagataaagatcctagataaagcctctaaccggatgaattt |
359 |
Q |
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| T |
5943248 |
aagattcctaactattaaacgtggaacatctttgaaaccacctatatggtggcatatcttagataaagatcttagataaagcctctaaccggatgaattt |
5943347 |
T |
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| Q |
360 |
agagtgatgtatgtagcaagcaagaaatgttgatatatcagtttttcgttctttctagagtgtggcttgct |
430 |
Q |
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| T |
5943348 |
agagtgatgtatgtagcaagcaaaaaatgttgatatatcagtttttctttctttctagagtgtggcttgct |
5943418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 5943012 - 5943176
Alignment:
| Q |
11 |
cacagataacaaaaaggtgactaaaagtcttcgcctccacacctcaaaatgtacacaaagaagcattttgatatctcaagacacgtatttctaaaacatt |
110 |
Q |
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| T |
5943012 |
cacacataacaaaaaggtgactaacagtcttcgcctccacacctcaaaatgtacacaaagaagccttttgatatctcaagacacgtatttctaaaacatt |
5943111 |
T |
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| Q |
111 |
agtttacatatcgattgtagtggtttggtttagttatggagttgtgaattgaaaattaaaccgaa |
175 |
Q |
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| T |
5943112 |
agtttacatatcgattgcagtggtttggtttagttatggagttgtgaattgaaaattaaaccgaa |
5943176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 5978078 - 5978110
Alignment:
| Q |
263 |
attcctaactattaaacgtggaacatctttgaa |
295 |
Q |
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| T |
5978078 |
attcctaactattaaacgtggaacatctttgaa |
5978110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 18506807 - 18506754
Alignment:
| Q |
17 |
taacaaaaaggtgactaaaagtcttcgcctccacacctcaaaatgtacacaaag |
70 |
Q |
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| T |
18506807 |
taacaaaaaggtgactaacagtctccgcctcgacaccacaaaaagcacacaaag |
18506754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 26240800 - 26240743
Alignment:
| Q |
17 |
taacaaaaaggtgactaaaagtcttcgcctccacacctcaaaatgtacacaaagaagc |
74 |
Q |
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| T |
26240800 |
taacaaaaaagtgactaacagtctccgcctccgcaccacaaaatacacacaaagaagc |
26240743 |
T |
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