View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_low_15 (Length: 426)
Name: NF1858_low_15
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 52003708 - 52004123
Alignment:
| Q |
1 |
aagaatttataggggaatacagctaggttaatttgtggcatattaattattataatgcaatatannnnnnnnnnnnnatgtataatgttgtattca---- |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
52003708 |
aagaatttataggggaatacagctaggttaatttgtggcatattaattattataatgcaatatattttttattttttatgtataatgttgtattcatttc |
52003807 |
T |
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| Q |
97 |
-ttggtgtctatactctatatagcctaagacataaagggaatctgctttatatttcacagtggggtttatgtctttttcaccgaaatctctgcaataaaa |
195 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52003808 |
attggtgtctatactatatatagcctaagacataaagggaatctgctttatatttcacagtggggtttatgtctttttcaccgaaatctctgcaataaaa |
52003907 |
T |
|
| Q |
196 |
aacacagactatatatataattgtcattctgctacaaaactttgaccctcacaactgtctggaaacaaaaaggattaatattacttttataaaaacctgc |
295 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52003908 |
aacacagactatatatataattgtcattttgctacaaaactttgaccctcacaactgtctggaaacaaaaaggattaatattacttttataaaaacctgc |
52004007 |
T |
|
| Q |
296 |
caggttctttgtatgtttaaaattctgtaatattaattcttgtaatcaaactctctttctctaaacccttgaacaaaatttcccatatggaccctacttc |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52004008 |
caggttctttgtatgtttaaaattctgtaatattaattcttgtaatcaaactctctttctctaaacccttgaacaaaatttcccatatggaccctacttc |
52004107 |
T |
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| Q |
396 |
acaatgcttccaaagt |
411 |
Q |
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|||||||||||||||| |
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| T |
52004108 |
acaatgcttccaaagt |
52004123 |
T |
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