View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_low_16 (Length: 405)
Name: NF1858_low_16
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_low_16 |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 328
Target Start/End: Complemental strand, 6770068 - 6769738
Alignment:
| Q |
8 |
tgagatgaaataatagcatagaactaaataaactaactattccattgtttgacttttgttacaaagaaatattaaatagaaaagatannnnnnnnagaaa |
107 |
Q |
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| T |
6770068 |
tgagatgaaataatagcatagaactaaataaactaactattccattgtttgacttttgttacaaagaaatattaaatagaaaatatattttttttagaaa |
6769969 |
T |
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| Q |
108 |
ag------------gtgtgcaatgaatagaaaaactagatataatcctgcagttgcgcggatatcttgaatgtttagtttgtgannnnnnnnagagaata |
195 |
Q |
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| T |
6769968 |
agccaaacgaaaaggtgtgcaatgaatagaaaaactagatataatcctgcggttgcgcggatatcttgaatgcttagtt-gtgattttttttagagaata |
6769870 |
T |
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| Q |
196 |
aataactattaattatatagagtgaagttgttgataacatatgaaagatgagtaagaacaagaaagatatatcggcattacttaaaaaacatgccagtaa |
295 |
Q |
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| T |
6769869 |
aataactattaattatatagagtgaagttgttgataacatatgaaagataagtaagaacaagaaagatatatcggcattacttaaaaagcatgccagtaa |
6769770 |
T |
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| Q |
296 |
acagggccggccgtagggggccctaattttttc |
328 |
Q |
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| T |
6769769 |
acagggccggctgta-ggggccctaattttttc |
6769738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 6735196 - 6735157
Alignment:
| Q |
19 |
aatagcatagaactaaataaactaactattccattgtttga |
59 |
Q |
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| T |
6735196 |
aatagcata-aactaaataaacaaactattccattgtttga |
6735157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 326 - 405
Target Start/End: Complemental strand, 16150756 - 16150677
Alignment:
| Q |
326 |
ttcttacttgctttttcatgttattacatttgttatcagttgttctttcatgttgatacatttgttattagttgttcttt |
405 |
Q |
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| T |
16150756 |
ttcttacttgttttttcatgttattacatttgttatcagttgttctttcatattaatacatttgttattagttgttcttt |
16150677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 326 - 405
Target Start/End: Original strand, 23301555 - 23301634
Alignment:
| Q |
326 |
ttcttacttgctttttcatgttattacatttgttatcagttgttctttcatgttgatacatttgttattagttgttcttt |
405 |
Q |
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| T |
23301555 |
ttcttacttgttttttcatgttattacatttgttattagttgttctttcatgttaatacatttgttattagttgttcttt |
23301634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 375
Target Start/End: Original strand, 23301600 - 23301636
Alignment:
| Q |
339 |
tttcatgttattacatttgttatcagttgttctttca |
375 |
Q |
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| T |
23301600 |
tttcatgttaatacatttgttattagttgttctttca |
23301636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 7e-28; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 326 - 405
Target Start/End: Complemental strand, 8925677 - 8925599
Alignment:
| Q |
326 |
ttcttacttgctttttcatgttattacatttgttatcagttgttctttcatgttgatacatttgttattagttgttcttt |
405 |
Q |
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| T |
8925677 |
ttcttacttg-tttttcatgttaatacatttgttatcagttgttctttcatgttaatacatttgttattagttgttcttt |
8925599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 326 - 405
Target Start/End: Complemental strand, 8935934 - 8935856
Alignment:
| Q |
326 |
ttcttacttgctttttcatgttattacatttgttatcagttgttctttcatgttgatacatttgttattagttgttcttt |
405 |
Q |
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| T |
8935934 |
ttcttacttg-tttttcatgttaatacatttgttatcagttgttctttcatgttaatacatttgttattagttgttcttt |
8935856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 375
Target Start/End: Complemental strand, 8925633 - 8925597
Alignment:
| Q |
339 |
tttcatgttattacatttgttatcagttgttctttca |
375 |
Q |
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| T |
8925633 |
tttcatgttaatacatttgttattagttgttctttca |
8925597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 375
Target Start/End: Complemental strand, 8935890 - 8935854
Alignment:
| Q |
339 |
tttcatgttattacatttgttatcagttgttctttca |
375 |
Q |
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| T |
8935890 |
tttcatgttaatacatttgttattagttgttctttca |
8935854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 3067323 - 3067378
Alignment:
| Q |
188 |
agagaataaataactattaatta--tatagagtgaagttgttgataacatatgaaa |
241 |
Q |
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| T |
3067323 |
agagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaa |
3067378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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