View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1858_low_18 (Length: 400)

Name: NF1858_low_18
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1858_low_18
NF1858_low_18
[»] chr8 (1 HSPs)
chr8 (10-384)||(36362582-36362958)


Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 10 - 384
Target Start/End: Original strand, 36362582 - 36362958
Alignment:
Q  10 gcatagggtggaatataatcatcgaatcccaatagctcagctgttaaatttccacagttagttagacagcagtnnnnnnngt--ttactgtgcatttaca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||           ||||||||||||||||    
T  36362582 gcatagggtggaatataatcatcgaatcccaatagctcagctgttaaatttccacagttagttagacaacagtaaaaaaaaaaattactgtgcatttaca 36362681  T
Q  108 aaatgtgaaagaatcaatattatatgcaagaatatgtcctactttaatcttgtgtttgttannnnnnnnaccaaatcggtaattctggtaattttttatc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||    
T  36362682 aaatgtgaaagaatcaatattatatgcaagaatatgtcctactttaatcttgtgtttgttattttttttaccaaatcggtaattctggtaattttttatc 36362781  T
Q  208 tctttggcagtaaatttatgtctcatgatgcactttacctttgtcaaaaatataaagcatactgtcttaaattgcatatttaatgctaccaaacagaacc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36362782 tctttggcagtaaatttatgtctcatgatgcactttacctttgtcaaaaatataaagcatactgtcttaaattgcatatttaatgctaccaaacagaacc 36362881  T
Q  308 atgtgaatggaatggaatggaatttaaagcccggtcacaagattcacactcatcaagaggtgtagtagagtactagc 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36362882 atgtgaatggaatggaatggaatttaaagcccggtcacaagattcacactcatcaagaggtgtagtagagtactagc 36362958  T

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