View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_low_19 (Length: 398)
Name: NF1858_low_19
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 11 - 379
Target Start/End: Original strand, 11191002 - 11191370
Alignment:
| Q |
11 |
cagagacaaagaaaaaaccctatttcaacttggagaaggataaaacagcttatgcttaaaagatttaactctcgcgatagattctctctctcaccgcttg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11191002 |
cagagacaaagaaaaaaccctatttcaacttggagaaggataaaacagcttatgcttaaaagatttaactctcgggatagattctctctctcaccgcttg |
11191101 |
T |
|
| Q |
111 |
tatcaattaaaaatttggagaggaagcagctcccgtcgccgcggatgtatcaaacgtcggtgaagggtggttatgatgagaatatgaaggagaagttgag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11191102 |
tatcaattaaaaatttggagaggaagcagctcccgtcgccgcggatgtatcaaacgtcggtgaagggtggttatgatgagaatatgaaggagaagttgag |
11191201 |
T |
|
| Q |
211 |
taaggatctcggatatggtgggaaattatcgcatgatgctgatatggaaaataagaaggcgttgacaataaaaagatcaaacttcctgtcatggaagtaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11191202 |
taaggatctcggatatggtgggaaattatcgcatgatgctgatatggaaaataagaaggcgttgacaataaaaagatcaaacttcctgtcatggaagtaa |
11191301 |
T |
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| Q |
311 |
ttgatgtattagtagcagataaagagagttcgacaataaatgcccaacctgatgtatttggtactggtc |
379 |
Q |
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| T |
11191302 |
ttgatgtattagtagcagataaagagagttcgacaataaatgcccaacctgatgtatttggtactggtc |
11191370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 368351 - 368175
Alignment:
| Q |
13 |
gagacaaagaaaaaaccctatttcaacttggagaaggataaaacagcttatgcttaaaagatttaactctcgcgatagattctctctctcaccgcttgta |
112 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||||| | |||||| |||||||||||||||||| |||||| |||||||| || ||||| |
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| T |
368351 |
gagacaaagaaaaaaccctattcgaacttggagaaggatgaaacagttgatgcttgaaagatttaactctcgcggtagattgtctctctcgccacttgtt |
368252 |
T |
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| Q |
113 |
tcaattaaaaatttggagaggaagcagctcccgtcgccgcggatgtatcaaacgtcggtgaagggtggttatgatga |
189 |
Q |
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|||||| |||| ||||||||||| |||||| ||||||| ||||||||| ||||| |||||||||||||||||||||| |
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| T |
368251 |
tcaattgaaaaattggagaggaatcagctctcgtcgccacggatgtatgaaacgccggtgaagggtggttatgatga |
368175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 26 - 163
Target Start/End: Original strand, 22691791 - 22691928
Alignment:
| Q |
26 |
aaccctatttcaacttggagaaggataaaacagcttatgcttaaaagatttaactctcgcgatagattctctctctcaccgcttgtatcaattaaaaatt |
125 |
Q |
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||||||||| ||||||||||||||| |||||| | ||| || |||||||||||||||||| |||||| |||||||| |||||||| |||||| |||| | |
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| T |
22691791 |
aaccctattcgaacttggagaaggatgaaacagttgatgattgaaagatttaactctcgcggtagattgtctctctcgccgcttgtttcaattgaaaaat |
22691890 |
T |
|
| Q |
126 |
tggagaggaagcagctcccgtcgccgcggatgtatcaa |
163 |
Q |
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||| ||||||||| ||| ||||||| |||||||||||| |
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| T |
22691891 |
tggtgaggaagcaactctcgtcgccacggatgtatcaa |
22691928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 80 - 181
Target Start/End: Original strand, 37633809 - 37633910
Alignment:
| Q |
80 |
tctcgcgatagattctctctctcaccgcttgtatcaattaaaaatttggagaggaagcagctcccgtcgccgcggatgtatcaaacgtcggtgaagggtg |
179 |
Q |
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||||||| |||||| |||||||| ||||||| |||||| | ||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||| |
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| T |
37633809 |
tctcgcggtagattgtctctctcgccgcttgcttcaattgagaatttggagaggaagcagctctcgtcgccgcggatgtatcaaacgccagtgaagggtg |
37633908 |
T |
|
| Q |
180 |
gt |
181 |
Q |
| |
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|| |
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|
| T |
37633909 |
gt |
37633910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 271 - 328
Target Start/End: Original strand, 55563295 - 55563352
Alignment:
| Q |
271 |
gttgacaataaaaagatcaaacttcctgtcatggaagtaattgatgtattagtagcag |
328 |
Q |
| |
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||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
55563295 |
gttgacaatgaaaagatcaaacttccagtcatggaaggaattgatgtattagtagcag |
55563352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 329 - 373
Target Start/End: Original strand, 55563454 - 55563498
Alignment:
| Q |
329 |
ataaagagagttcgacaataaatgcccaacctgatgtatttggta |
373 |
Q |
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|||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
55563454 |
ataaagcgagttcgacaataaatgcccaacctgatttatttggta |
55563498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 88 - 199
Target Start/End: Original strand, 30440961 - 30441072
Alignment:
| Q |
88 |
tagattctctctctcaccgcttgtatcaattaaaaatttggagaggaagcagctcccgtcgccgcggatgtatcaaacgtcggtgaagggtggttatgat |
187 |
Q |
| |
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|||||| ||||||| |||||| | |||||| |||||||||| | |||| ||||| ||| ||||||||||||||||| |||| ||||||||||||||||| |
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| T |
30440961 |
tagattgtctctcttgccgcttttttcaattgaaaatttggatatgaagtagctctcgttgccgcggatgtatcaaatgtcgatgaagggtggttatgat |
30441060 |
T |
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| Q |
188 |
gagaatatgaag |
199 |
Q |
| |
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||| |||||||| |
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| T |
30441061 |
gaggatatgaag |
30441072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 32163242 - 32163177
Alignment:
| Q |
11 |
cagagacaaagaaaaaaccctatttcaacttggagaaggataaaacagcttatgcttaaaagattt |
76 |
Q |
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||||| |||||||||||||||||| |||||| |||||||| |||||| | ||||||||||||||| |
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| T |
32163242 |
cagaggcaaagaaaaaaccctattcgaacttgcagaaggatgaaacagttgatgcttaaaagattt |
32163177 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 267
Target Start/End: Complemental strand, 43375048 - 43375006
Alignment:
| Q |
225 |
atggtgggaaattatcgcatgatgctgatatggaaaataagaa |
267 |
Q |
| |
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|||||| ||||||| |||||||||||||||||||||| ||||| |
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| T |
43375048 |
atggtgagaaattaccgcatgatgctgatatggaaaagaagaa |
43375006 |
T |
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