View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1858_low_21 (Length: 392)
Name: NF1858_low_21
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_low_21 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 219595 - 219217
Alignment:
| Q |
1 |
tgacaaactaaattccaataatactatatatagctaaaagttaaaacttgaaagtaacaatgaattaatattttaaaatgcaaaccttgtagacatatgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
219595 |
tgacaaactaaattccaataatactatatatagctaaaagttaaaacttgaaagtaacaatgaattaatattttaaaatgcaaaccttgtagacatatgg |
219496 |
T |
|
| Q |
101 |
gcatccagggtaatcaaaatcatctgaattaggttttctcatacgctcagggtgaaattgcaaacccataataaacttaccctcttctggattataagca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
219495 |
gcatccagggtaatcaaaatcatctgaattaggttttctcatacgctcagggtgaaattgcaaacccataataaacttaccctcttctggattataagca |
219396 |
T |
|
| Q |
201 |
taagggtcataaaacccttcaattaaaccatcattagcaaaagccattggaacaaaacgttgtgccaatctcttaaccccttgatgatgatagctattaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
219395 |
taagggtcataaaacccttcaattaaaccatcattagcaaaagccattggaacaaaacgttgtgccaatctcttaaccccttgatgatgatagctattaa |
219296 |
T |
|
| Q |
301 |
ccaaaatctcatccattccttcatttttcaaagaatccttaaaccaatcaaacaaaggtgtgtttttaacaaccttaat |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
219295 |
ccaaaatctcatccattccttcatttttcaaagaatccttaaaccaatcaaacaaaggtgtgtttttaacaaccttaat |
219217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 141; Significance: 8e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 99 - 373
Target Start/End: Original strand, 31651709 - 31651980
Alignment:
| Q |
99 |
gggcatccagggtaatcaaaatcatctgaattaggttttctcatacgctcagggtgaaattgcaaacccataataaacttaccctcttctggattataag |
198 |
Q |
| |
|
|||||||| || |||||||| |||||||||| || ||| ||||| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31651709 |
gggcatcccggataatcaaattcatctgaatcagctttcctcatccgctcgggatgaaactgcaatcccataataaacttaccctcttctggattataag |
31651808 |
T |
|
| Q |
199 |
cataagggtcataaaacccttcaattaaaccatcattagcaaaagccattggaacaaaacgttgtgccaatctcttaaccccttgatgatgatagctatt |
298 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||| | ||||||||| |||||||||||||||||||| |
|
|
| T |
31651809 |
catcagggtcataaaacccttcaatcaaaccatcaggagcaaaagccattggaacaaaacgctgtgcaagtctcttaacaccttgatgatgatagctatt |
31651908 |
T |
|
| Q |
299 |
aaccaaaatctcatccattccttcatttttcaaagaatccttaaaccaatcaaacaaaggtgtgtttttaacaac |
373 |
Q |
| |
|
||||||||| |||||| |||| || |||||||||||||||||||| | ||||||||| |||| |||||| |
|
|
| T |
31651909 |
aaccaaaat---gtccattttatcatcttccaaagaatccttaaaccaatgatgcaaaggtgtattttcaacaac |
31651980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University