View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1858_low_22 (Length: 390)

Name: NF1858_low_22
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1858_low_22
NF1858_low_22
[»] chr4 (4 HSPs)
chr4 (1-304)||(42998435-42998738)
chr4 (1-304)||(42999028-42999331)
chr4 (207-304)||(50232993-50233090)
chr4 (194-304)||(43605582-43605691)
[»] chr5 (4 HSPs)
chr5 (83-303)||(21654547-21654767)
chr5 (168-304)||(29632558-29632694)
chr5 (207-303)||(21012013-21012109)
chr5 (194-235)||(10641659-10641700)
[»] chr2 (6 HSPs)
chr2 (302-375)||(45414768-45414841)
chr2 (167-303)||(13067119-13067255)
chr2 (202-302)||(15930901-15931001)
chr2 (207-304)||(40915477-40915574)
chr2 (251-304)||(4814602-4814654)
chr2 (251-304)||(9059899-9059951)
[»] chr8 (1 HSPs)
chr8 (194-301)||(5242660-5242766)
[»] chr1 (3 HSPs)
chr1 (167-301)||(48538558-48538692)
chr1 (194-302)||(39179965-39180073)
chr1 (207-304)||(24535404-24535501)
[»] scaffold0421 (1 HSPs)
scaffold0421 (202-303)||(4569-4670)
[»] chr7 (3 HSPs)
chr7 (194-304)||(18478629-18478739)
chr7 (214-304)||(18418404-18418494)
chr7 (250-304)||(23485479-23485532)
[»] chr6 (4 HSPs)
chr6 (194-305)||(7015463-7015574)
chr6 (194-300)||(5169674-5169780)
chr6 (274-302)||(907778-907806)
chr6 (251-299)||(8609491-8609539)
[»] chr3 (11 HSPs)
chr3 (207-303)||(32793231-32793327)
chr3 (207-303)||(50833604-50833700)
chr3 (207-303)||(50842153-50842249)
chr3 (251-304)||(50833759-50833812)
chr3 (251-304)||(50833824-50833877)
chr3 (251-304)||(50841976-50842029)
chr3 (251-304)||(50842041-50842094)
chr3 (186-298)||(16980972-16981083)
chr3 (194-303)||(40166578-40166686)
chr3 (251-300)||(50717211-50717259)
chr3 (251-300)||(50795589-50795637)
[»] scaffold0246 (1 HSPs)
scaffold0246 (249-299)||(11383-11433)


Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 42998435 - 42998738
Alignment:
Q  1 gtggatgggaaaaccattgcacatgtgtgggaaacccnnnnnnnttctgagtggagagctttctgttttccatgcggcatatcaagagttgaaatttaat 100  Q
    ||||||||||||||||||||||||||||||||| ||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42998435 gtggatgggaaaaccattgcacatgtgtgggaagccgaaaaaaattctgagtggagagctttctgttttccatgcggcatatcaagagttgaaatttaat 42998534  T
Q  101 gcgattcattatataaaaaatttaacaaaatagcacgttatataatgttctgattgctgccatcaagatttttcaaattcatctggtggaatatagaggg 200  Q
    |||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||    
T  42998535 gcgattcattgtatcaaaaatttaacaaaatggcacgttatataatgttctgattgctgacatcaagatttttcaaattcatgtggtggaatatggaggg 42998634  T
Q  201 aattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagg 300  Q
    || |||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42998635 aagtttttagggttaacactaacaacaattaatgcataagatttagagggaaatttttagggttaagtgtttgcagacctaataacattaaggagtaagg 42998734  T
Q  301 gata 304  Q
    ||||    
T  42998735 gata 42998738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 42999028 - 42999331
Alignment:
Q  1 gtggatgggaaaaccattgcacatgtgtgggaaacccnnnnnnnttctgagtggagagctttctgttttccatgcggcatatcaagagttgaaatttaat 100  Q
    ||||||||||||||||||| || |||||||||| ||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42999028 gtggatgggaaaaccattgaacgtgtgtgggaagccgaaaaaaattctgagtggagagctttctgttttccatgcggcatatcaagagttgaaatttaat 42999127  T
Q  101 gcgattcattatataaaaaatttaacaaaatagcacgttatataatgttctgattgctgccatcaagatttttcaaattcatctggtggaatatagaggg 200  Q
    |||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||    
T  42999128 gcgattcattgtatcaaaaatttaacaaaatggcacgttatataatgttctgattgctgacatcaagatttttcaaattcatgtggtggaatatggaggg 42999227  T
Q  201 aattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagg 300  Q
    || ||||||||||||||||||||| |||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42999228 aagtttttagggttaacactaacagcaattaatgcataagatttagagggaaatttttagggttaagtgtttgcagacctaataacattaaggagtaagg 42999327  T
Q  301 gata 304  Q
    ||||    
T  42999328 gata 42999331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 207 - 304
Target Start/End: Original strand, 50232993 - 50233090
Alignment:
Q  207 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 304  Q
    ||||||||||||||||||||||||||| ||  |  || |    ||||||||||| |||||||| ||||  ||||||||||||||||||||||||||||    
T  50232993 ttagggttaacactaacaacaattaatacaacattttgagcgagaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggata 50233090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 194 - 304
Target Start/End: Original strand, 43605582 - 43605691
Alignment:
Q  194 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 293  Q
    ||||||||| ||||||||| || |||| | | |||||||||||  |||||| ||   |||||||||| ||||| |||||||| |||||||||||||||||    
T  43605582 tagagggaaatttttagggcta-cacttagagcaattaatgcagcagatttgaagccaaatttttagggttaattgtttgcaaacctaataacattaagg 43605680  T
Q  294 agtaagggata 304  Q
    || ||| ||||    
T  43605681 aggaagagata 43605691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 141; Significance: 8e-74; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 83 - 303
Target Start/End: Complemental strand, 21654767 - 21654547
Alignment:
Q  83 caagagttgaaatttaatgcgattcattatataaaaaatttaacaaaatagcacgttatataatgttctgattgctgccatcaagatttttcaaattcat 182  Q
    |||||| ||||||||||||| ||||||| ||| | |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  21654767 caagaggtgaaatttaatgcaattcattgtatcacaaatttaacaaaatggcacgttatataatgttctgattgctgacatcaagatttttcaaattcat 21654668  T
Q  183 ctggtggaatatagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaa 282  Q
     ||||||||||| ||||||| |||||||||||||||||||||| ||||||||||| ||||||| | |||||  | ||| ||| |||||||||| ||||||    
T  21654667 gtggtggaatatggagggaagtttttagggttaacactaacaataattaatgcatcagatttagagggaaaaatgtagggtttagtgtttgcacacctaa 21654568  T
Q  283 taacattaaggagtaagggat 303  Q
    |||||||||||||||||||||    
T  21654567 taacattaaggagtaagggat 21654547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 168 - 304
Target Start/End: Original strand, 29632558 - 29632694
Alignment:
Q  168 atttttcaaattcatctggtggaatatagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaag 267  Q
    |||||| |||||||  | || |||| |||||| ||||||||||||| ||||||||||||||||||||||| ||||||| | |||||||||||| ||||||    
T  29632558 atttttgaaattcaaatagtagaatttagaggaaattttttagggtcaacactaacaacaattaatgcattagatttagagggaaatttttagggttaag 29632657  T
Q  268 tgtttgcagacctaataacattaaggagtaagggata 304  Q
    |||||||| ||||||||||||||||||||||||||||    
T  29632658 tgtttgcaaacctaataacattaaggagtaagggata 29632694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 207 - 303
Target Start/End: Original strand, 21012013 - 21012109
Alignment:
Q  207 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggat 303  Q
    ||||||||||||||||||||||||||| ||  |  || | | |||||||||||| |||||||| ||||  |||||||||||||||||||||||||||    
T  21012013 ttagggttaacactaacaacaattaatacaacattttgagagggaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggat 21012109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 10641659 - 10641700
Alignment:
Q  194 tagagggaattttttagggttaacactaacaacaattaatgc 235  Q
    ||||||||||||| |||||||| ||||||||||| |||||||    
T  10641659 tagagggaattttctagggttatcactaacaacatttaatgc 10641700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 8e-34; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 302 - 375
Target Start/End: Complemental strand, 45414841 - 45414768
Alignment:
Q  302 atacattcgtatgtcacgatgaaagcaccactgctccaaatgacacataatatatgcggtgtatgagttaaaag 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45414841 atacattcgtatgtcacgatgaaagcaccactgctccaaatgacacataatatatgcggtgtatgagttaaaag 45414768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 167 - 303
Target Start/End: Original strand, 13067119 - 13067255
Alignment:
Q  167 gatttttcaaattcatctggtggaatatagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaa 266  Q
    ||||||| |||||||| ||||||||||| ||  ||||||||||||||||| ||||||  ||||||||| |  || |||| | |||||||||||| |||||    
T  13067119 gatttttgaaattcatttggtggaatattgaaagaattttttagggttaatactaacggcaattaatgaaccagttttagagggaaatttttagggttaa 13067218  T
Q  267 gtgtttgcagacctaataacattaaggagtaagggat 303  Q
    ||| ||||  |||||||||||||||||||||||||||    
T  13067219 gtgattgctaacctaataacattaaggagtaagggat 13067255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 202 - 302
Target Start/End: Original strand, 15930901 - 15931001
Alignment:
Q  202 attttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaaggg 301  Q
    |||||||||||||| |||||| ||||||||||||||  | |||| | |||||||||||| ||||| |||||||| |||||||||||||||||| ||||||    
T  15930901 attttttagggttagcactaagaacaattaatgcattggttttagagggaaatttttagggttaaatgtttgcaaacctaataacattaaggaataaggg 15931000  T
Q  302 a 302  Q
    |    
T  15931001 a 15931001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 207 - 304
Target Start/End: Original strand, 40915477 - 40915574
Alignment:
Q  207 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 304  Q
    ||||||||||||||||||||||||||| ||  |  || | | |||| ||||||| |||||||| ||||  |||||| |||||||||||||||||||||    
T  40915477 ttagggttaacactaacaacaattaatacaacattttgagagggaattttttagggttaagtgattgctaacctaacaacattaaggagtaagggata 40915574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 304
Target Start/End: Complemental strand, 4814654 - 4814602
Alignment:
Q  251 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 304  Q
    |||| ||||| |||||||||||||| ||||||||| ||||||||||||||||||    
T  4814654 aaatctttagggttaagtgtttgca-acctaataaaattaaggagtaagggata 4814602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 304
Target Start/End: Original strand, 9059899 - 9059951
Alignment:
Q  251 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 304  Q
    |||||||||| |||||||  ||||| ||||||||| ||||||||||||||||||    
T  9059899 aaatttttagggttaagttgttgca-acctaataagattaaggagtaagggata 9059951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 194 - 301
Target Start/End: Original strand, 5242660 - 5242766
Alignment:
Q  194 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 293  Q
    ||||||||||||||||||| || || |||||||||||||||||  ||||||| | |||||||||||| |||||||||||||| |||||||||||||||||    
T  5242660 tagagggaattttttagggcta-caataacaacaattaatgcaatagatttagagggaaatttttagggttaagtgtttgcaaacctaataacattaagg 5242758  T
Q  294 agtaaggg 301  Q
    ||||||||    
T  5242759 agtaaggg 5242766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 167 - 301
Target Start/End: Complemental strand, 48538692 - 48538558
Alignment:
Q  167 gatttttcaaattcatctggtggaatatagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaa 266  Q
    ||||||| |||||||| ||||||||||| ||  ||||||||||||||||||||||||  ||||||||| |  || |||| | |||||||||||| |||||    
T  48538692 gatttttgaaattcatttggtggaatattgaaagaattttttagggttaacactaacggcaattaatgaaacagttttagagggaaatttttagggttaa 48538593  T
Q  267 gtgtttgcagacctaataacattaaggagtaaggg 301  Q
    ||| ||||  |||||||||||||||||||||||||    
T  48538592 gtgattgctaacctaataacattaaggagtaaggg 48538558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 194 - 302
Target Start/End: Complemental strand, 39180073 - 39179965
Alignment:
Q  194 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 293  Q
    |||||||||||||||||||||| ||| ||||||| |||||||| |||||||| | ||||||| |||| ||| |||| ||||| |||||||||||||||||    
T  39180073 tagagggaattttttagggttatcaccaacaacatttaatgcaaaagatttagagggaaattattagggtttagtggttgcaaacctaataacattaagg 39179974  T
Q  294 agtaaggga 302  Q
    |||||||||    
T  39179973 agtaaggga 39179965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 207 - 304
Target Start/End: Original strand, 24535404 - 24535501
Alignment:
Q  207 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 304  Q
    ||||||||||||||||||||||||||| ||  |  || | | |||||||||| | |||||||| ||||  ||||||||||||||||||||||||||||    
T  24535404 ttagggttaacactaacaacaattaatacaacattttgagagggaaattttttgggttaagtgattgctaacctaataacattaaggagtaagggata 24535501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0421 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 202 - 303
Target Start/End: Complemental strand, 4670 - 4569
Alignment:
Q  202 attttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaaggg 301  Q
    |||||||||||||| |||||| ||||||||||||||  | |||| | ||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  4670 attttttagggttagcactaagaacaattaatgcattggttttagagggaaatttttagagttaagtgtttgcaaacctaataacattaaggaataaggg 4571  T
Q  302 at 303  Q
    ||    
T  4570 at 4569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 194 - 304
Target Start/End: Complemental strand, 18478739 - 18478629
Alignment:
Q  194 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 293  Q
    ||||||||||||| |||||||| ||| ||||||| ||||||||  ||||||| | ||||||| |||| ||| |||  ||||| |||||||||||||||||    
T  18478739 tagagggaattttctagggttatcaccaacaacatttaatgcaatagatttagagggaaattattagggtttagtagttgcaaacctaataacattaagg 18478640  T
Q  294 agtaagggata 304  Q
    |||||||||||    
T  18478639 agtaagggata 18478629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 304
Target Start/End: Original strand, 18418404 - 18418494
Alignment:
Q  214 taacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 304  Q
    |||||||||||||||||||| ||  |  || | | |||||||||||| |||||||| ||||  |||||| |||||||||||||||||||||    
T  18418404 taacactaacaacaattaatacaacattttgagagggaaatttttagggttaagtgattgctaacctaacaacattaaggagtaagggata 18418494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 250 - 304
Target Start/End: Complemental strand, 23485532 - 23485479
Alignment:
Q  250 gaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 304  Q
    ||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||    
T  23485532 gaaatttttagggttaagtgtttgca-acctaataaaattaaggagtaagggata 23485479  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 194 - 305
Target Start/End: Complemental strand, 7015574 - 7015463
Alignment:
Q  194 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 293  Q
    |||||| ||||||||||| ||| ||||||||||| ||||| ||  ||||||| | ||||||  |||| ||| |||| ||||| |||||||||||||||||    
T  7015574 tagaggaaattttttaggattatcactaacaacatttaatacaatagatttagagggaaataattagggtttagtggttgcaaacctaataacattaagg 7015475  T
Q  294 agtaagggatac 305  Q
    ||||||||||||    
T  7015474 agtaagggatac 7015463  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 300
Target Start/End: Complemental strand, 5169780 - 5169674
Alignment:
Q  194 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 293  Q
    |||||| |||||| |||||||| |||| |||||  ||||||||  ||||||| | ||||||| |||| ||| |||| ||||| ||||||||| |||||||    
T  5169780 tagaggaaattttctagggttatcactgacaacgtttaatgcaatagatttagagggaaattattagggtttagtggttgcaaacctaataatattaagg 5169681  T
Q  294 agtaagg 300  Q
    |||||||    
T  5169680 agtaagg 5169674  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 302
Target Start/End: Original strand, 907778 - 907806
Alignment:
Q  274 cagacctaataacattaaggagtaaggga 302  Q
    |||||||||||||||||||||||||||||    
T  907778 cagacctaataacattaaggagtaaggga 907806  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 299
Target Start/End: Original strand, 8609491 - 8609539
Alignment:
Q  251 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaag 299  Q
    |||||| ||| ||||| ||| |||||||||||||| |||||||||||||    
T  8609491 aaatttctagggttaattgtatgcagacctaataagattaaggagtaag 8609539  T

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Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 207 - 303
Target Start/End: Original strand, 32793231 - 32793327
Alignment:
Q  207 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggat 303  Q
    ||||||||||||||||||||||||||| ||  |  || | | |||||||||||| |||||||| ||||  |||||||||||||||||||||||||||    
T  32793231 ttagggttaacactaacaacaattaatacaacattttgagagggaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggat 32793327  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 207 - 303
Target Start/End: Original strand, 50833604 - 50833700
Alignment:
Q  207 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggat 303  Q
    ||||||||||||||||||||||||||| ||  |  || | |  ||||||||||| |||||||| ||||  |||||||||||||||||||||||||||    
T  50833604 ttagggttaacactaacaacaattaatacaacattttgagagagaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggat 50833700  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 207 - 303
Target Start/End: Complemental strand, 50842249 - 50842153
Alignment:
Q  207 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggat 303  Q
    ||||||||||||||||||||||||||| ||  |  || | |  ||||||||||| |||||||| ||||  |||||||||||||||||||||||||||    
T  50842249 ttagggttaacactaacaacaattaatacaacattttgagagagaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggat 50842153  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 251 - 304
Target Start/End: Complemental strand, 50833812 - 50833759
Alignment:
Q  251 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 304  Q
    |||||||||| |||||||||||||| ||||||||||||||| ||||||||||||    
T  50833812 aaatttttagggttaagtgtttgcaaacctaataacattaaagagtaagggata 50833759  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 251 - 304
Target Start/End: Complemental strand, 50833877 - 50833824
Alignment:
Q  251 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 304  Q
    |||||||||| |||||||||||||| ||||||||||||||| ||||||||||||    
T  50833877 aaatttttagggttaagtgtttgcaaacctaataacattaacgagtaagggata 50833824  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 251 - 304
Target Start/End: Original strand, 50841976 - 50842029
Alignment:
Q  251 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 304  Q
    |||||||||| |||||||||||||| ||||||||||||||| ||||||||||||    
T  50841976 aaatttttagggttaagtgtttgcaaacctaataacattaacgagtaagggata 50842029  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 251 - 304
Target Start/End: Original strand, 50842041 - 50842094
Alignment:
Q  251 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 304  Q
    |||||||||| |||||||||||||| ||||||||||||||| ||||||||||||    
T  50842041 aaatttttagggttaagtgtttgcaaacctaataacattaaagagtaagggata 50842094  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 186 - 298
Target Start/End: Complemental strand, 16981083 - 16980972
Alignment:
Q  186 gtggaatatagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataa 285  Q
    |||||||| |||| |||||||| ||||||||||||||||  | ||||||||| ||||||| |   || ||||||| ||||||   ||||| |||||||||    
T  16981083 gtggaatagagagagaattttt-agggttaacactaacagaagttaatgcatgagatttagagaaaattttttagggttaagcaattgcaaacctaataa 16980985  T
Q  286 cattaaggagtaa 298  Q
    |||||||||||||    
T  16980984 cattaaggagtaa 16980972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 194 - 303
Target Start/End: Original strand, 40166578 - 40166686
Alignment:
Q  194 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 293  Q
    ||||||||| ||||||||| || || | |||||||||||||||  ||||||  |   |||||| ||| ||| | | ||||||||| ||||||||||||||    
T  40166578 tagagggaaatttttagggcta-caattacaacaattaatgcagcagatttggagccaaatttctagggttgattatttgcagacttaataacattaagg 40166676  T
Q  294 agtaagggat 303  Q
    ||||||||||    
T  40166677 agtaagggat 40166686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 300
Target Start/End: Complemental strand, 50717259 - 50717211
Alignment:
Q  251 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagg 300  Q
    |||| |||||||||||||||||||| ||||||||| ||||||||||||||    
T  50717259 aaatctttagagttaagtgtttgca-acctaataaaattaaggagtaagg 50717211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 300
Target Start/End: Original strand, 50795589 - 50795637
Alignment:
Q  251 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagg 300  Q
    |||| |||||||||||||||||||| ||||||||| ||||||||||||||    
T  50795589 aaatctttagagttaagtgtttgca-acctaataaaattaaggagtaagg 50795637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 299
Target Start/End: Complemental strand, 11433 - 11383
Alignment:
Q  249 ggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaag 299  Q
    |||||||||||  |||||||||||| | |||||||||||||||||||||||    
T  11433 ggaaatttttaaggttaagtgtttgaaaacctaataacattaaggagtaag 11383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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