View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1858_low_24 (Length: 374)
Name: NF1858_low_24
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_low_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 14 - 356
Target Start/End: Complemental strand, 51390544 - 51390223
Alignment:
| Q |
14 |
tcatcaaaccagaattatcataagtacaagcctgacatctccaatcagcagcaacccgggcagcattcctccccgtacggccgacagttcccctaccagt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51390544 |
tcatcaaaccagaattatcataagtacaagcctgacatctccaatcagcagcaacctgggcagcattcctccccgtacggccgacagttcccctaccagt |
51390445 |
T |
|
| Q |
114 |
aatcctttctctcctaaacccaaacaaatccctaaaaaacttcacaggccaattcaacacagaattaaaccccctaaaaatagaattaaaacccctaaca |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
51390444 |
aatcctttctctcctaaacccaaacaaatccctaaaaaacttcacaggccaattcaacacagaattaaaacccctaacaataga---------------- |
51390361 |
T |
|
| Q |
214 |
atagaattcaacggatttgaacccgagaaatttcgtctgaatctcaaatacacaagtccagcaagtataccactaagatgacctaaaaacgacacattag |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51390360 |
-----attcaacggatttgaacccgagaaatttcgtctgaatctcaaatacacaagtccagcaagtataccactaagatgacctaaaaacgacacattag |
51390266 |
T |
|
| Q |
314 |
gcacaaacatttgaatcaaaatcaactcagcccaagccgcata |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51390265 |
gcacaaacatttgaatcaaaatcaactcagcccaagccgcata |
51390223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University