View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_low_28 (Length: 350)
Name: NF1858_low_28
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 20 - 340
Target Start/End: Original strand, 13114421 - 13114740
Alignment:
| Q |
20 |
atagccagtcttattttgttagataaaacttggttgttgttgacgacttgttttataggctatagtaaaaatatcgtgctctttgcacgaatctagggca |
119 |
Q |
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| T |
13114421 |
atagccagtcttattttgttagataaaacttggttgttgttgacgacttattttataggctatagtaaaaatatcgtgctctttgcacgaatctagggca |
13114520 |
T |
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| Q |
120 |
gcacaaggtagaaaaagacatgcgaaaatgtatcacatgttattataagaaaacttttcttaaagtagatagataaatatggtgtatctgtattttaaga |
219 |
Q |
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| T |
13114521 |
g-acaaggtagaaaaagacatgcgaaaatgtatcacatgttattataagaaaacttttcttaaagtagatagataaatatggtgtatctgtattttaaga |
13114619 |
T |
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| Q |
220 |
gcttttcaaattacaagttgacaataaaaacctgtgtttgttcttggtgtatgtatatttataccagccagggatatccatcccagtggtaattaatttg |
319 |
Q |
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| T |
13114620 |
gcttttcaaattacaagttgacaataaaaacctgtgtttgttcttggtgtatgtatatttataccagccagggatatccatcccagtggtaattaatttg |
13114719 |
T |
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| Q |
320 |
gttttgcgtcacccctctctg |
340 |
Q |
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| T |
13114720 |
gttttgcgtcacccctctctg |
13114740 |
T |
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