View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_low_29 (Length: 349)
Name: NF1858_low_29
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_low_29 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 349
Target Start/End: Original strand, 42113501 - 42113832
Alignment:
| Q |
18 |
tttaactctctttggaccgtacgtttcctcctcgtacttttcatcttcttctggtgcatcattgaacttttccggttaccttttttccggagaaaatatc |
117 |
Q |
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| T |
42113501 |
tttaactctctttggaccgtacgtttcctcctcgtacttttcatcttcttctggtgcatcattgaacttttccggttaccttttttccggagaaaatatc |
42113600 |
T |
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| Q |
118 |
tatatccactttcaccctctctagatattactcaacaagccaatctctgcaaaatccacattgttttttctcttggattctttgaaccagcttttctctt |
217 |
Q |
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| T |
42113601 |
tatatccactttcaccctccctagatattactcaacaagccaatctctgcaaaatccacattgttttttctcttggattctttgaaccagcttttctctt |
42113700 |
T |
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| Q |
218 |
aacgttgttgtttctcctcaacgcttccatcagaaaaaagacaccaaacgacggttgggctgtaacctttgtgtttagcacgtgtcttccattaggtatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42113701 |
aacgttgttgtttctcctcaacgcttccatcagaaaaaagacaccaaacgacggttgggctgtaacctttgtgtttagcacgtgtcttccattaggtatt |
42113800 |
T |
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| Q |
318 |
cttcagggtttacttgtctatttcaatccatt |
349 |
Q |
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||||| |||||||||||||||||||||||||| |
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| T |
42113801 |
cttcaaggtttacttgtctatttcaatccatt |
42113832 |
T |
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