View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_low_30 (Length: 346)
Name: NF1858_low_30
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 11 - 330
Target Start/End: Original strand, 14728114 - 14728433
Alignment:
| Q |
11 |
aagaaaatctgatatagaacatactttgagagaagatgtgaaacaccaaggaaatgaatttgatggccatccttcatccataaataagaaaaatccctac |
110 |
Q |
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| T |
14728114 |
aagaaaatctgatatagaacatactttgagagaagatgtgaaacaccaaggaaatgaatttgatggccatccttcatccataaataagaaaaatccctac |
14728213 |
T |
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| Q |
111 |
acaagaatcaataaacaagtcaatgaacagaaataattttactattagctgtgaaacatggtagaagaagcaagatacgtgatgtaccttagaaatgtga |
210 |
Q |
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| T |
14728214 |
acaagaatcaataaacaagtcaatgaacagaaataattttactattagctgtgaaacatggtagaagaagcaagatacgtgatgtaccttagaaatgtga |
14728313 |
T |
|
| Q |
211 |
agaacttccagattaggagtcttgtggaaaatgcctgctaatacttcactggtggggtaaaaataccccaagggcacatcaagatgcgtcaaattgaaga |
310 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14728314 |
agaacttccagattaggagtcttgtggaaaatgcttgctaatacttcactggtggggtaaaaataccccaagggcacatcaagatgcgtcaaattgaaga |
14728413 |
T |
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| Q |
311 |
acggaggcaaaagatgaaga |
330 |
Q |
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| T |
14728414 |
acggaggcaaaagatgaaga |
14728433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 11 - 327
Target Start/End: Complemental strand, 17595371 - 17595054
Alignment:
| Q |
11 |
aagaaaatctgatatagaacatactttgagagaagatgtgaaacaccaaggaaatgaatttgatggccatccttcatccataaataagaaaaatccctac |
110 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17595371 |
aagaaaatctgaaatagaacatactttgagagaagatgtgaaacaccaaggaaatgaatttgatggccatccttcatccaagaataagaaaaatccctac |
17595272 |
T |
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| Q |
111 |
acaagaatcaataaacaagtcaatgaacagaaataattttactattagctgtgaaacatggtagaagaagcaagatacgtgatgtaccttagaaatgtga |
210 |
Q |
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| T |
17595271 |
acaagaatcaataaacaagtcaatgaacagaaataattttactattagccgtgaaacatggtagaagaagcaagatacgtgatgtaccttagaaatgtga |
17595172 |
T |
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| Q |
211 |
agaacttccagattaggagtc-ttgtggaaaatgcctgctaatacttcactggtggggtaaaaataccccaagggcacatcaagatgcgtcaaattgaag |
309 |
Q |
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| T |
17595171 |
agaacttccagattaggagtctttgtggaaaatgcctgctaatacttcactggtggggtaaaaataccccaagggcacatcaagatgcgtcaaattgaag |
17595072 |
T |
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| Q |
310 |
aacggaggcaaaagatga |
327 |
Q |
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| T |
17595071 |
aacggaggcaaaagatga |
17595054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 259
Target Start/End: Original strand, 31217705 - 31217785
Alignment:
| Q |
179 |
agcaagatacgtgatgtaccttagaaatgtgaagaacttccagattaggagtcttgtggaaaatgcctgctaatacttcac |
259 |
Q |
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|||||||||| |||||||| | |||||||||||| ||| || |||||| |||| ||| |||| ||||||||||||||| |
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| T |
31217705 |
agcaagatacaagatgtaccccataaatgtgaagaaattctagtttaggactctttcggagaatgtctgctaatacttcac |
31217785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 259
Target Start/End: Original strand, 54219327 - 54219391
Alignment:
| Q |
195 |
taccttagaaatgtgaagaacttccagattaggagtcttgtggaaaatgcctgctaatacttcac |
259 |
Q |
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|||||| |||||||||||||||||||| |||||||| || ||| |||| || |||||| ||||| |
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| T |
54219327 |
taccttggaaatgtgaagaacttccagtttaggagttttacggagaatgtctactaatagttcac |
54219391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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