View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_low_34 (Length: 333)
Name: NF1858_low_34
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 25 - 159
Target Start/End: Original strand, 32926469 - 32926600
Alignment:
| Q |
25 |
tcaatatgtagatgcctagttatcttcatccaaagagggttcggatatatttgtttagagctaacattaggcctccacacatacgttggaccaacctgat |
124 |
Q |
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| T |
32926469 |
tcaatatgtagatgcctagttatcttcatccaaagagggttcggatatatttgtttagtgctaacattaggcctccacacatacgttggaccaacctg-- |
32926566 |
T |
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| Q |
125 |
caggataagttccactaatagtattgagagataac |
159 |
Q |
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| T |
32926567 |
-aggataagttccactaatagtattgagagataac |
32926600 |
T |
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Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 232 - 317
Target Start/End: Original strand, 32926625 - 32926710
Alignment:
| Q |
232 |
atcatagatatctagccaaagaaaggaataagatcatatttactaaagatgtagatgttatgaatcaagcatttactattacatca |
317 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32926625 |
atcaaagatatctagccaaagaaaggaataagaccatatttactaaagatgtagatgttatgaatcaagcatttactattaaatca |
32926710 |
T |
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