View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_low_38 (Length: 329)
Name: NF1858_low_38
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 22 - 325
Target Start/End: Original strand, 26688988 - 26689290
Alignment:
| Q |
22 |
taaattgggagtttactcattcatttaatttacagtttaaactaagtnnnnnnnttcaaaattccacccaaagtttaaaagaatctcttgactcacaaga |
121 |
Q |
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|||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26688988 |
taaatttggagtttactcattcattttatttacagtttaaactaagtaaaaaa-ttcaaaattccacccaaagtttaaaagaatctcttgactcacaaga |
26689086 |
T |
|
| Q |
122 |
gagactaaccaataatatacaatgatctgaacacaacaggcttacccccaaataatcctgttctgtgaaagtgaaactatttggaagtattttcaaatac |
221 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26689087 |
gagactaaccaataatatacaatcatctgaacacaacaggcttacccccaaataatcctgttctgtgaaagtgaaactatttggaagtattttcaaatac |
26689186 |
T |
|
| Q |
222 |
tatgatgcattttgtgattgattgttgcttcccagctgtaactggacccttctgttgtcttctttcttattagtctcttctaactctctattttcatctc |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26689187 |
tatgatgcattttgtgattgattgttgcttcccagctgtaactggacccttctgttgtcttctttcttattagtctcttctaactctctattttcatttc |
26689286 |
T |
|
| Q |
322 |
actc |
325 |
Q |
| |
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|||| |
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| T |
26689287 |
actc |
26689290 |
T |
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