View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1858_low_39 (Length: 329)

Name: NF1858_low_39
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1858_low_39
NF1858_low_39
[»] chr1 (6 HSPs)
chr1 (153-329)||(48043565-48043734)
chr1 (158-329)||(48051531-48051701)
chr1 (19-68)||(48043874-48043923)
chr1 (165-242)||(48056891-48056968)
chr1 (154-221)||(48045485-48045552)
chr1 (70-108)||(48043794-48043832)


Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 153 - 329
Target Start/End: Complemental strand, 48043734 - 48043565
Alignment:
Q  153 gggattccactgctggttctaggt-aataagattgacaaacctggggatttgtctaagcaagacctgacaaaaaagatttaagtagtgtgtgatcctttg 251  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48043734 gggattccactgctggttctaggttaataagattgacaaacctggggatttgtctaagcaagacctgacaaaaaagatttaagtagtgtgtgatcctttg 48043635  T
Q  252 atttcaaaaaatttgcnnnnnnncaggatgtgctcgtactttccattcatatgatgttgtttcacatgagcaggggac 329  Q
    ||||||||||||||||       ||||||||||        |||||||||||||||||||||||||||||||||||||    
T  48043634 atttcaaaaaatttgctttttttcaggatgtgc--------tccattcatatgatgttgtttcacatgagcaggggac 48043565  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 158 - 329
Target Start/End: Complemental strand, 48051701 - 48051531
Alignment:
Q  158 tccactgctggttctaggtaataagattgacaaacctggggatttgtctaagcaagacctgacaaaaaagatttaagtagtgtgtgatcctttgatttca 257  Q
    |||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||     
T  48051701 tccactgctggttctaagtaacaagattgataaacctggggatttgtctaagcaagacctgacagaaaaggtttaagtagtgtgtgatcctatgatttc- 48051603  T
Q  258 aaaaatttgcnnnnnnncaggatgtgctcgtactttccattcatatgatgttgtttcacatgagcaggggac 329  Q
    |||  || ||       |||||||||  ||||||| || ||||||||||||||||||||||| |||||||||    
T  48051602 aaattttagcttttaatcaggatgtgtccgtacttgcctttcatatgatgttgtttcacatgtgcaggggac 48051531  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 48043923 - 48043874
Alignment:
Q  19 gcagccgcttatgagaatttacctgcttcaagaagtgaactccatgactt 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48043923 gcagccgcttatgagaatttacctgcttcaagaagtgaactccatgactt 48043874  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 48056968 - 48056891
Alignment:
Q  165 ctggttctaggtaataagattgacaaacctggggatttgtctaagcaagacctgacaaaaaagatttaagtagtgtgt 242  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||||||  |||| ||||||| |||||| |||||    
T  48056968 ctggttcttggtaataagattgacaaacctggtgctttgtctaagcaagacacgacagaaaagatgtaagtactgtgt 48056891  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 48045552 - 48045485
Alignment:
Q  154 ggattccactgctggttctaggtaataagattgacaaacctggggatttgtctaagcaagacctgaca 221  Q
    |||||| | |||||||| |||||||||| |||||||||||||   |||||||||||||||||| ||||    
T  48045552 ggattcaattgctggttttaggtaataaaattgacaaacctgacaatttgtctaagcaagacccgaca 48045485  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 48043832 - 48043794
Alignment:
Q  70 aaagaatggagtgataagggtgatctcagattcaattcc 108  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  48043832 aaagaatggagtgataagggtgatctcagattcgattcc 48043794  T

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