View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1858_low_4 (Length: 620)

Name: NF1858_low_4
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1858_low_4
NF1858_low_4
[»] chr3 (6 HSPs)
chr3 (32-357)||(33990700-33991025)
chr3 (420-600)||(33991088-33991268)
chr3 (73-103)||(1116401-1116431)
chr3 (69-106)||(4216083-4216120)
chr3 (51-104)||(35335587-35335640)
chr3 (73-109)||(2452426-2452462)
[»] chr5 (4 HSPs)
chr5 (443-503)||(18854946-18855006)
chr5 (285-353)||(18855231-18855299)
chr5 (71-107)||(6760514-6760550)
chr5 (38-86)||(9897920-9897968)
[»] chr4 (5 HSPs)
chr4 (47-89)||(7367535-7367577)
chr4 (285-355)||(42868453-42868523)
chr4 (52-100)||(43843634-43843682)
chr4 (541-579)||(41571464-41571502)
chr4 (446-500)||(42868177-42868231)
[»] chr1 (2 HSPs)
chr1 (47-107)||(3523373-3523433)
chr1 (58-100)||(52156777-52156819)
[»] chr7 (2 HSPs)
chr7 (35-90)||(41775203-41775258)
chr7 (69-107)||(438696-438734)
[»] chr8 (2 HSPs)
chr8 (35-89)||(14227192-14227246)
chr8 (47-107)||(11556961-11557021)
[»] chr2 (2 HSPs)
chr2 (541-579)||(26004210-26004248)
chr2 (73-109)||(15804118-15804154)
[»] chr6 (4 HSPs)
chr6 (72-105)||(4323114-4323147)
chr6 (62-99)||(32926315-32926352)
chr6 (71-107)||(29236264-29236300)
chr6 (70-106)||(32921007-32921043)


Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 32 - 357
Target Start/End: Original strand, 33990700 - 33991025
Alignment:
Q  32 cagcacagacactggacacgacactaacacatagacgccaataataatttgagaaaattgaagtgattaaatgtaaaccattggtcagtgtcatacacca 131  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  33990700 cagcacatacactggacacgacactaacacatagacgccaataataatttgagaaaattgaagtgcttaaatgtaaaccatgggtcagtgtcatacacca 33990799  T
Q  132 gaatccagatatgttcagtgttatctgataattgagttttaagtttaatgtctctaacagtgaagttttattgaaatgcagttataaaagctgtgctata 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33990800 gaatccagatatgttcagtgttatctgataattgagttttaagtttaatgtctctaacagtgaagttttattgaaatgcagttataaaagctgtgctata 33990899  T
Q  232 taaagacgttgaaatttctgagaccaagaaggttgctggactaaaaggtaaactgaataaggttgttctggcttatagtggtggcttagacacatcggtt 331  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  33990900 taaagacgtagaaatttctgagaccaagaaggttgctggactaaaaggtaaattgaataaggttgttctggcttatagtggtggcttagacacatcggtt 33990999  T
Q  332 gttgtcccctggctgaggtatataaa 357  Q
    ||||||||||||||||||||||||||    
T  33991000 gttgtcccctggctgaggtatataaa 33991025  T

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Target: chr3; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 420 - 600
Target Start/End: Original strand, 33991088 - 33991268
Alignment:
Q  420 acaatatttgatgtttatttatatttcagagagaactatggctgtgatgttgtttgcttcactgctgatctaggccaagtatgttctaatctgtacataa 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33991088 acaatatttgatgtttatttatatttcagagagaactatggctgtgatgttgtttgcttcactgctgatctaggccaagtatgttctaatctgtacataa 33991187  T
Q  520 atatgatcaatagtctctaatgtatataaaatccttcaatttagtccctgctattaagattcatatgtcaaagactaaatt 600  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33991188 atatgataaatagtctctaatgtatataaaatccttcaatttagtccctgctattaagattcagatgtcaaagactaaatt 33991268  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 73 - 103
Target Start/End: Original strand, 1116401 - 1116431
Alignment:
Q  73 taataatttgagaaaattgaagtgattaaat 103  Q
    |||||||||||||||||||||||||||||||    
T  1116401 taataatttgagaaaattgaagtgattaaat 1116431  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 4216120 - 4216083
Alignment:
Q  69 ccaataataatttgagaaaattgaagtgattaaatgta 106  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  4216120 ccaataataattaaagaaaattgaagtgattaaatgta 4216083  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 35335587 - 35335640
Alignment:
Q  51 gacactaacacatagacgccaataataatttgagaaaattgaagtgattaaatg 104  Q
    |||||| |||||||||| | | |||||||||||||||||  |||||||||||||    
T  35335587 gacactgacacatagacactagtaataatttgagaaaatgaaagtgattaaatg 35335640  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 2452426 - 2452462
Alignment:
Q  73 taataatttgagaaaattgaagtgattaaatgtaaac 109  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  2452426 taataatttcagaaaattgaagtgattcaatgtaaac 2452462  T

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Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 443 - 503
Target Start/End: Complemental strand, 18855006 - 18854946
Alignment:
Q  443 tttcagagagaactatggctgtgatgttgtttgcttcactgctgatctaggccaagtatgt 503  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||    
T  18855006 tttcagagagaattatggctgtgatgttgtttgcttcactgctgatgttggccaagtatgt 18854946  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 285 - 353
Target Start/End: Complemental strand, 18855299 - 18855231
Alignment:
Q  285 tgaataaggttgttctggcttatagtggtggcttagacacatcggttgttgtcccctggctgaggtata 353  Q
    |||||||||||||  ||||||| || ||||||||||||||||||||  ||||||| |||||||||||||    
T  18855299 tgaataaggttgtattggcttacagcggtggcttagacacatcggtcattgtcccatggctgaggtata 18855231  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 6760550 - 6760514
Alignment:
Q  71 aataataatttgagaaaattgaagtgattaaatgtaa 107  Q
    |||||||||||||||||||| ||||||||||||||||    
T  6760550 aataataatttgagaaaatttaagtgattaaatgtaa 6760514  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 9897968 - 9897920
Alignment:
Q  38 agacactggacacgacactaacacatagacgccaataataatttgagaa 86  Q
    |||||| ||||||| |||| |||||| ||| ||||||||||||||||||    
T  9897968 agacaccggacacggcactcacacatcgacaccaataataatttgagaa 9897920  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 7367535 - 7367577
Alignment:
Q  47 acacgacactaacacatagacgccaataataatttgagaaaat 89  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  7367535 acacgacactaacacatagacaccaataataatttgagaaaat 7367577  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 285 - 355
Target Start/End: Complemental strand, 42868523 - 42868453
Alignment:
Q  285 tgaataaggttgttctggcttatagtggtggcttagacacatcggttgttgtcccctggctgaggtatata 355  Q
    ||||||||||||| || ||||| |||||||||||||||||||| ||  ||||||| ||| |||||||||||    
T  42868523 tgaataaggttgtacttgcttacagtggtggcttagacacatcagtcattgtcccatggttgaggtatata 42868453  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 43843682 - 43843634
Alignment:
Q  52 acactaacacatagacgccaataataatttgagaaaattgaagtgatta 100  Q
    |||||||||| ||||| |||||||||||||||||||||  |||||||||    
T  43843682 acactaacacgtagacaccaataataatttgagaaaataaaagtgatta 43843634  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 541 - 579
Target Start/End: Complemental strand, 41571502 - 41571464
Alignment:
Q  541 gtatataaaatccttcaatttagtccctgctattaagat 579  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  41571502 gtatataaaatccgtcaacttagtccctgctattaagat 41571464  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 446 - 500
Target Start/End: Complemental strand, 42868231 - 42868177
Alignment:
Q  446 cagagagaactatggctgtgatgttgtttgcttcactgctgatctaggccaagta 500  Q
    ||||||||| || || ||||||||||| ||||||||||||||| | |||||||||    
T  42868231 cagagagaattacggttgtgatgttgtgtgcttcactgctgatgttggccaagta 42868177  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 3523373 - 3523433
Alignment:
Q  47 acacgacactaacacatagacgccaataataatttgagaaaattgaagtgattaaatgtaa 107  Q
    |||||||||| |||| ||||| || |||||||||||| ||||| ||||||||| |||||||    
T  3523373 acacgacactgacacgtagacaccgataataatttgataaaatagaagtgattgaatgtaa 3523433  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 58 - 100
Target Start/End: Complemental strand, 52156819 - 52156777
Alignment:
Q  58 acacatagacgccaataataatttgagaaaattgaagtgatta 100  Q
    |||||||||||| |||||||| |||||||||| ||||||||||    
T  52156819 acacatagacgctaataataacttgagaaaatggaagtgatta 52156777  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 41775203 - 41775258
Alignment:
Q  35 cacagacactggacacgacactaacacatagacgccaataataatttgagaaaatt 90  Q
    ||||||||| |||||||||||||| |||| | | || |||||||||||||||||||    
T  41775203 cacagacaccggacacgacactaagacatggccaccgataataatttgagaaaatt 41775258  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 69 - 107
Target Start/End: Complemental strand, 438734 - 438696
Alignment:
Q  69 ccaataataatttgagaaaattgaagtgattaaatgtaa 107  Q
    ||||||||||||| ||||||||||||| |||||||||||    
T  438734 ccaataataatttaagaaaattgaagtaattaaatgtaa 438696  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 14227192 - 14227246
Alignment:
Q  35 cacagacactggacacgacactaacacatagacgccaataataatttgagaaaat 89  Q
    ||||||||||||||||| |||| |||| |  || |||||||||||||||||||||    
T  14227192 cacagacactggacacgtcactgacacgtcaacaccaataataatttgagaaaat 14227246  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 11557021 - 11556961
Alignment:
Q  47 acacgacactaacacatagacgccaataataatttgagaaaattgaagtgattaaatgtaa 107  Q
    |||| |||||||||  ||||| ||  |||||||||||||||||| |||||||| |||||||    
T  11557021 acacaacactaacatgtagacacctgtaataatttgagaaaatttaagtgattgaatgtaa 11556961  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 541 - 579
Target Start/End: Original strand, 26004210 - 26004248
Alignment:
Q  541 gtatataaaatccttcaatttagtccctgctattaagat 579  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  26004210 gtatataaaatccatcaatttagtccctgatattaagat 26004248  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 15804154 - 15804118
Alignment:
Q  73 taataatttgagaaaattgaagtgattaaatgtaaac 109  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  15804154 taataatttgagaaaatggaagtgattgaatgtaaac 15804118  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 105
Target Start/End: Original strand, 4323114 - 4323147
Alignment:
Q  72 ataataatttgagaaaattgaagtgattaaatgt 105  Q
    |||| |||||||||||||||||||||||||||||    
T  4323114 ataacaatttgagaaaattgaagtgattaaatgt 4323147  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 32926352 - 32926315
Alignment:
Q  62 atagacgccaataataatttgagaaaattgaagtgatt 99  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  32926352 atagacaccaataataatttaagaaaattgaagtgatt 32926315  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 29236264 - 29236300
Alignment:
Q  71 aataataatttgagaaaattgaagtgattaaatgtaa 107  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  29236264 aataataatttgagaaaatagaagtgattgaatgtaa 29236300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 32921043 - 32921007
Alignment:
Q  70 caataataatttgagaaaattgaagtgattaaatgta 106  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  32921043 caataataatttaagaaaattgaagtgatttaatgta 32921007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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