View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1858_low_40 (Length: 320)

Name: NF1858_low_40
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1858_low_40
NF1858_low_40
[»] chr4 (1 HSPs)
chr4 (10-306)||(25550183-25550478)


Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 10 - 306
Target Start/End: Original strand, 25550183 - 25550478
Alignment:
Q  10 aagagggttactggaaagtggatcatccgcatccaacaatcgttgcacataagcttcaaatcgatggatattgtcattgtcattgtcatttttaaacaat 109  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  25550183 aagagggttactggaaagtggatcatccgcatccaacaattgatgcacataagcttcaaatcgatggacattgtcattgtcattgtcatttttaaacaat 25550282  T
Q  110 ttttctactagaacaaacaaaactctaatttctaaattattctcattcacgcaattttttaaattaatccaatctactaaggaagggacgcaatcaaaag 209  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25550283 ttttctactagaacaa-caaaactctaatttctaaattattctcattcacgcaattttttaaattaatccaatctactaaggaagggacacaatcaaaag 25550381  T
Q  210 ttctctaatattaccaaaaatttatagtaggcaaatataacttgaaaaaacattaatctcaatattactttaggctgaagtagtagtgcataacata 306  Q
    ||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25550382 ttctctaatattaccaggaacttatagtaggcaaatataacttgaaaaaacattaatctcaatattactttaggctgaagtagtagtgcataacata 25550478  T

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