View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_low_41 (Length: 316)
Name: NF1858_low_41
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 13 - 298
Target Start/End: Complemental strand, 45400589 - 45400302
Alignment:
| Q |
13 |
attatactatagttgattaatcacaaaaaatagtatataattgttatccatgagcttaacacaa--ttgcgcagggcagggttggaaatgtctataagtc |
110 |
Q |
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| T |
45400589 |
attatactatagttgattaatcacaaaaaatagtatataattgttacccatgagcttaacacacagttgcgcagggcagggttcgaaatgtctataagtc |
45400490 |
T |
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| Q |
111 |
atggaaacattacttatagtgccattcccaaatcaaagtttgacaaaaacaaaattgaacttattaaatcaacatctcacttattgaaaattttggcatt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45400489 |
atggaaacattacttatagtgccattcccaaatcaaagtttgacaaaaacaaaattgaacttattaaatcaacatctcacttattgaaaattttggcatt |
45400390 |
T |
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| Q |
211 |
gaattaatgtaatggtactttctggtcaatgttagcatgatgacatcatattcaaatctaacattacaccaaaacttcacattatgag |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45400389 |
gaattaatgtaatggtactttctggtcaatgttagcatgatgacatcatattcaaatctaacattacaccaaaacttcacattatgag |
45400302 |
T |
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