View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_low_46 (Length: 287)
Name: NF1858_low_46
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 3691565 - 3691841
Alignment:
| Q |
1 |
ccttgagagcaatcggtagaatacccgaaacatgttcttgtattagcggggagtgtaatttcctatactttt-aaatgtgtaatgtgcagatctctattt |
99 |
Q |
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||||||||| |||| ||| |||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3691565 |
ccttgagaggaatccgtataatagcttaaacatgttcttgtattagcggggagtgtaatttcctatactttttaaatgtgtaatgtgcagatctctattt |
3691664 |
T |
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| Q |
100 |
gcaaagctataactaagatatgaagtgttgactttctctaaattaatgacagaatctagattctcttgttgcagaagaggtgagattctatagcagaaga |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3691665 |
gcaaagctataactaagatatgaagtgttgactttctctaaatttatgactgaatctagattctcttgttgcagaagaggtgagattctatagcagaaga |
3691764 |
T |
|
| Q |
200 |
aaattctaaagaaaagaaatagttttacatgtggcaagttggtatgttattttttccttcaaaaattgcatatgctg |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3691765 |
aaattctaaagaaaagaaatagttttacatgtggcaagttggtatgttattttttccttcaaaaattgcatatgctg |
3691841 |
T |
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