View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_low_48 (Length: 286)
Name: NF1858_low_48
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 35148782 - 35148526
Alignment:
| Q |
18 |
aattaaatctaaattaccagttatatacacctttatgaaccaagttatagttaagaataatgattgcacagaaggtgcaagcgtggtgttctaggccacg |
117 |
Q |
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| T |
35148782 |
aattaaatctaaattaccagttatatacacctttatgaaccaagttatagttaagaataatgattgcacagaaggtgcaagcgtggtgttctaggccacg |
35148683 |
T |
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| Q |
118 |
acatatatcaaaataaatccagatgctattcaggcttcactcaatctattttccatccaaaagttgggcttgaagcaccaagatccttcatctgtaatgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35148682 |
acatatatcaaaataaatccagatgctattcaggcttcac-ccatctattttccatccaaaagttgggcttgaagcaccaagatccttcatctggaatgc |
35148584 |
T |
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| Q |
218 |
ttcataagcatagtttcttttttggtcctaattgttgcgacaaccaatcctatatatt |
275 |
Q |
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| T |
35148583 |
ttcataagcatagtttcttttttggtcctaattgttgcgacaaccaatcctatatatt |
35148526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 40811921 - 40811883
Alignment:
| Q |
178 |
aagttgggcttgaagcaccaagatccttcatctgtaatg |
216 |
Q |
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| T |
40811921 |
aagttcggcttgaagcaccaagatcattcatctgtaatg |
40811883 |
T |
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