View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858_low_50 (Length: 281)
Name: NF1858_low_50
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858_low_50 |
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| [»] scaffold0002 (2 HSPs) |
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| [»] scaffold1652 (2 HSPs) |
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| [»] scaffold0902 (2 HSPs) |
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| [»] scaffold1176 (3 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 165299 - 165042
Alignment:
| Q |
1 |
tggagtcacagaaggagcagcagcaggaggagaaatagtaggcgatggtccttgagatggaggggtagagatccaggatggagcgacagcaggagaacca |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
165299 |
tggagtcacagcaggagcagcagcaggaggagaaatagtaggcgatggtccttgagatggaggggtagagatccaggatggagcgacagcaggagaacca |
165200 |
T |
|
| Q |
101 |
gaggaagcagacggtgaaggagagggagcactattcagaggtaccggagaagacgccacttgtgagtcagcggagggagaaatagcaggtgatggaaacg |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
165199 |
gagaaagcagacggtgaaggagagggagcactattcagaggtaccggagaagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacg |
165100 |
T |
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| Q |
201 |
gagaagactggggggatgatggtggtgatcgagcaacagcggaactcagaaacagtgc |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
165099 |
gagaagactggggggatgatggtggtgatcgagcaacagcggaactcagaaacagtgc |
165042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 165349 - 165283
Alignment:
| Q |
29 |
ggagaaatagtaggcgatggtccttgagatggaggggtagagatccaggatggagcgacagcaggag |
95 |
Q |
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|||||||| | |||||||||||||||||||||||| ||||||||| | |||||| |||||||||| |
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| T |
165349 |
ggagaaatcgcaggcgatggtccttgagatggaggagtagagatcgaccatggagtcacagcaggag |
165283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 14248427 - 14248684
Alignment:
| Q |
1 |
tggagtcacagaaggagcagcagcaggaggagaaatagtaggcgatggtccttgagatggaggggtagagatccaggatggagcgacagcaggagaacca |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14248427 |
tggagtcacagcaggagcagcagcaggaggagaaatagtaggcgatggtccttgagatggaggggtagagatccaggatggagcgacagcaggagaacca |
14248526 |
T |
|
| Q |
101 |
gaggaagcagacggtgaaggagagggagcactattcagaggtaccggagaagacgccacttgtgagtcagcggagggagaaatagcaggtgatggaaacg |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
14248527 |
gagaaagcagacggtgaaggagagggagcactattcagaggtaccggagaagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacg |
14248626 |
T |
|
| Q |
201 |
gagaagactggggggatgatggtggtgatcgagcaacagcggaactcagaaacagtgc |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14248627 |
gagaagactggggggatgatggtggtgatcgagcaacagcggaactcagaaacagtgc |
14248684 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 14316989 - 14317165
Alignment:
| Q |
1 |
tggagtcacagaaggagcagcagcaggaggagaaatagtaggcgatggtccttgagatggaggggtagagatccaggatggagcga------------ca |
88 |
Q |
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|
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| || |
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| T |
14316989 |
tggagtcacatcaggagcagcagcagaaggagaaatagtaggcgatggtccttgagatggtggggtagagatccatgatggagcgacaacaggagctgca |
14317088 |
T |
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| Q |
89 |
gcaggagaaccagaggaagcagacggtgaaggagagggagcactattcagaggtaccggagaagacgccacttgtga |
165 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
14317089 |
gcaggagaaccagaggaagcagacggtgaaggagagggagcactattcagaggtaccggaggagacgccactggtga |
14317165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 188 - 258
Target Start/End: Original strand, 14317161 - 14317231
Alignment:
| Q |
188 |
ggtgatggaaacggagaagactggggggatgatggtggtgatcgagcaacagcggaactcagaaacagtgc |
258 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14317161 |
ggtgatggaaacggagaagacttgggtgatgatggtggtgatcgagcaacagcggaactcagaaacagtgc |
14317231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 14248377 - 14248443
Alignment:
| Q |
29 |
ggagaaatagtaggcgatggtccttgagatggaggggtagagatccaggatggagcgacagcaggag |
95 |
Q |
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|||||||| | |||||||||||||||||||||||| ||||||||| | |||||| |||||||||| |
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| T |
14248377 |
ggagaaatcgcaggcgatggtccttgagatggaggagtagagatcgaccatggagtcacagcaggag |
14248443 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: scaffold1652
Description:
Target: scaffold1652; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 263 - 9
Alignment:
| Q |
16 |
agcagcagcaggaggagaaatagtaggcgatggtccttgagatggaggggtagagatccaggatggagcgacagcaggag------------aaccagag |
103 |
Q |
| |
|
|||||||| ||||| |||||| |||||||||||| ||||||||||||| ||||||||| | ||||||| ||||||||||| ||||||| |
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| T |
263 |
agcagcaggaggagaagaaatcgtaggcgatggtacttgagatggaggagtagagatcgacgatggagagacagcaggagcagcagcgggagaaccagat |
164 |
T |
|
| Q |
104 |
gaagcagacggtgaaggagagggagcactattcagaggtaccggagaagacgccacttgtgagtcagcggagggagaaatagcaggtgatggaaacggag |
203 |
Q |
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||||||| || | ||| ||||||||||||||||| || |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
163 |
gaagcagtcgttaaagaagagggagcactattcacagttaccggaggagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacggag |
64 |
T |
|
| Q |
204 |
aagactggggggatgatggtggtgatcgagcaacagcggaactcagaaacagtgc |
258 |
Q |
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|
|||||| ||| |||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
63 |
aagacttgggtgatgatggtggtgatctagcaacggcggaactcagaaacagtgc |
9 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 359 - 263
Alignment:
| Q |
1 |
tggagtcacagaaggagcagcagcaggaggagaaatagtaggcgatggtccttgagatggaggggtagagatccaggatggagcgacagcaggagaa |
97 |
Q |
| |
|
||||||||||| |||||| |||||| |||||||||| |||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
359 |
tggagtcacagcaggagcggcagcaagaggagaaatcgtaggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggagaa |
263 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 3543 - 3762
Alignment:
| Q |
13 |
aggagcagcagcaggaggagaaatagtaggcgatggtccttgagatggaggggtagagatccaggatggagcgacagcaggag------------aacca |
100 |
Q |
| |
|
||||||||||| |||| | |||| |||||||||||| |||||| ||||||| |||||||| | ||||||| ||||||||||| ||||| |
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| T |
3543 |
aggagcagcagagggagtaaaaattgtaggcgatggtgcttgagttggagggatagagatcgacgatggagtgacagcaggagcagcagcgggagaacca |
3642 |
T |
|
| Q |
101 |
gaggaagcagacggtgaaggagagggagcactattcagaggtaccggagaagacgccacttgtgagtcagcggagggagaaatagcaggtgatggaaacg |
200 |
Q |
| |
|
|| ||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3643 |
gatgaagcagttggtgaagaagagggagcactattcagaggtaccggaggagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacg |
3742 |
T |
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| Q |
201 |
gagaagactggggggatgat |
220 |
Q |
| |
|
||||||||| |||||||||| |
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| T |
3743 |
gagaagacttgggggatgat |
3762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 3466 - 3532
Alignment:
| Q |
29 |
ggagaaatagtaggcgatggtccttgagatggaggggtagagatccaggatggagcgacagcaggag |
95 |
Q |
| |
|
|||||||| | ||||| |||| ||||||||||||| ||||||||| | ||||||| |||||||||| |
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|
| T |
3466 |
ggagaaatcgcaggcgttggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggag |
3532 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: scaffold1176
Description:
Target: scaffold1176; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 140 - 46
Alignment:
| Q |
1 |
tggagtcacagaaggagcagcagcaggaggagaaatagtaggcgatggtccttgagatggaggggtagagatccaggatggagcgacagcaggag |
95 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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|
| T |
140 |
tggagtcacagcaggagcagcagcaggaggagaaatagtaggcgatggtccttgagatggaggggtagagatccaggatggatcgacaacaggag |
46 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 163 - 258
Target Start/End: Complemental strand, 1320 - 1225
Alignment:
| Q |
163 |
tgagtcagcggagggagaaatagcaggtgatggaaacggagaagactggggggatgatggtggtgatcgagcaacagcggaactcagaaacagtgc |
258 |
Q |
| |
|
||||| ||| ||||||||||| ||||| ||||||||||||||||||| |||||||| || ||||||| |||||| | | |||| ||||||||||| |
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|
| T |
1320 |
tgagttagctgagggagaaatcgcaggagatggaaacggagaagacttgggggatgttgatggtgattaagcaacggtgaaacttagaaacagtgc |
1225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 190 - 124
Alignment:
| Q |
29 |
ggagaaatagtaggcgatggtccttgagatggaggggtagagatccaggatggagcgacagcaggag |
95 |
Q |
| |
|
|||||||| | |||||||||| ||||||||||||| ||||||||| | ||||||| |||||||||| |
|
|
| T |
190 |
ggagaaatcgcaggcgatggtgcttgagatggaggagtagagatcgatgatggagtcacagcaggag |
124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 37245288 - 37245382
Alignment:
| Q |
146 |
ggagaagacgccacttgtgagtcagcggagggagaaatagcaggtgatggaaacggagaagac-tggggg--gatgatggtggtgatcgagcaac |
237 |
Q |
| |
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|||| ||| |||||| |||||| ||||||||||||||| |||||||||||||||||| || |||| | ||||||||||||||||||||||| |
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|
| T |
37245288 |
ggagcagatgccactggtgagttagcggagggagaaattattggtgatggaaacggagaaaacatgggcgatgatgatggtggtgatcgagcaac |
37245382 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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